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We are an interdisciplinary ecology and environmental data science research group at the University of Florida combining Ethan White’s lab, which uses data science to understand ecological systems using large ecological and environmental datasets and Morgan Ernest’s lab, which studies how ecological systems change through time and runs long-term monitoring efforts in the Everglades and the Arizona desert. We do cutting edge research, collect and publish large open datasets, develop open source software, build websites, train scientists in computational tools, and generally try to make science a better, more efficient, more diverse and inclusive place.

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  1. DeepForest DeepForest Public

    Python Package for Airborne RGB machine learning

    Python 523 176

  2. PortalData PortalData Public

    Official Repo of the Portal Project Data

    R 46 30

  3. retriever retriever Public

    Quickly download, clean up, and install public datasets into a database management system

    Python 307 132

  4. portalr portalr Public

    A collection of functions to summarize the Portal Data

    R 11 12

  5. DeepTreeAttention DeepTreeAttention Public

    Implementation of Hang et al. 2020 "Hyperspectral Image Classification with Attention Aided CNNs" for tree species prediction

    Python 119 38

  6. portalcasting portalcasting Public

    Model development, deployment, and evaluation for forecasting Portal ecosystem dynamics

    R 8 10

Repositories

Showing 10 of 185 repositories
  • BOEM Public

    Bureau of Ocean Energy Management collaboration with the University of Florida

    weecology/BOEM’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Nov 27, 2024
  • EvergladesWadingBird Public

    Data from the Everglades breeding bird monitoring project

    weecology/EvergladesWadingBird’s past year of commit activity
    R 3 CC0-1.0 3 9 1 Updated Nov 26, 2024
  • wiki Public

    Weecology's Wiki - how to navigate life in the lab from choosing and pursuing a career path to using the printer

    weecology/wiki’s past year of commit activity
    HTML 1 4 6 0 Updated Nov 26, 2024
  • website Public

    Lab website

    weecology/website’s past year of commit activity
    TeX 4 MIT 22 1 0 Updated Nov 25, 2024
  • DeepForest Public

    Python Package for Airborne RGB machine learning

    weecology/DeepForest’s past year of commit activity
    Python 523 MIT 176 68 (3 issues need help) 8 Updated Nov 22, 2024
  • portalr Public

    A collection of functions to summarize the Portal Data

    weecology/portalr’s past year of commit activity
    R 11 12 5 0 Updated Nov 22, 2024
  • PortalData Public

    Official Repo of the Portal Project Data

    weecology/PortalData’s past year of commit activity
    R 46 30 5 0 Updated Nov 21, 2024
  • weecology/portal-forecasts’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Nov 21, 2024
  • AI_for_ecology_workshop Public

    A repository for a WILDLABS sponsored workshop on machine learning for biodiversity monitoring.

    weecology/AI_for_ecology_workshop’s past year of commit activity
    CSS 0 0 0 0 Updated Nov 20, 2024
  • MillionTrees Public

    The MillionTreesBenchmark

    weecology/MillionTrees’s past year of commit activity
    Python 10 GPL-3.0 3 8 1 Updated Nov 20, 2024