Column names, Record does not match collection schema

[henrykironde]

In nest_detection.py we provide the schema as below. However, in nest_detection.py:124: we get UserWarning: Column names longer than 10 characters will be truncated when saved to ESRI Shapefile. this could be and issue if the column names are truncated

  schema = {
        "geometry": "Polygon",
        "properties": {
            'matched_xmin': 'float',
            'matched_ymin': 'float',
            'xmax': 'float',
            'matched_ymax': 'float',
            'label': 'str',
            'score': 'float',
            'Site': 'str',
            'Date': 'str',
            'Year': 'str',
            'bird_id': 'int',
            'event': 'str',
            'target_index': 'int'
        }
    }

[Sun Jan 28 03:42:40 2024]
localrule detect_nests:
    input: /blue/ewhite/everglades/predictions/2020/Joule/Joule_2020_combined.shp
    output: /blue/ewhite/everglades/detected_nests/2020/Joule/Joule_2020_detected_nests.shp
    jobid: 1000
    reason: Missing output files: /blue/ewhite/everglades/detected_nests/2020/Joule/Joule_2020_detected_nests.shp; Updated input files: /blue/ewhite/everglades/predictions/2020/Joule/Joule_2020_combined.shp
    wildcards: year=2020, site=Joule
    resources: tmpdir=/scratch/local/22378485

python nest_detection.py /blue/ewhite/everglades/predictions/2020/Joule/Joule_2020_combined.shp
/orange/ewhite/PortalForecasts/.conda/envs/EvergladesTools/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).
  from pandas.core import (
/blue/ewhite/everglades/EvergladesTools/Zooniverse/nest_detection.py:124: UserWarning: Column names longer than 10 characters will be truncated when saved to ESRI Shapefile.
  result_shp.to_file(filename, schema=schema)
Traceback (most recent call last):
  File "/blue/ewhite/everglades/EvergladesTools/Zooniverse/nest_detection.py", line 262, in <module>
    detect_nests(path, year, site, savedir=savedir)
  File "/blue/ewhite/everglades/EvergladesTools/Zooniverse/nest_detection.py", line 124, in detect_nests
    result_shp.to_file(filename, schema=schema)
  File "/orange/ewhite/PortalForecasts/.conda/envs/EvergladesTools/lib/python3.11/site-packages/geopandas/geodataframe.py", line 1264, in to_file
    _to_file(self, filename, driver, schema, index, **kwargs)
  File "/orange/ewhite/PortalForecasts/.conda/envs/EvergladesTools/lib/python3.11/site-packages/geopandas/io/file.py", line 612, in _to_file
    _to_file_fiona(df, filename, driver, schema, crs, mode, **kwargs)
  File "/orange/ewhite/PortalForecasts/.conda/envs/EvergladesTools/lib/python3.11/site-packages/geopandas/io/file.py", line 641, in _to_file_fiona
    colxn.writerecords(df.iterfeatures())
  File "/orange/ewhite/PortalForecasts/.conda/envs/EvergladesTools/lib/python3.11/site-packages/fiona/collection.py", line 558, in writerecords
    self.session.writerecs(records, self)
  File "fiona/ogrext.pyx", line 1397, in fiona.ogrext.WritingSession.writerecs
ValueError: Record does not match collection schema: ['matched_xmin', 'matched_ymin', 'xmax', 'matched_ymax', 'label', 'score', 'image_path', 'Site', 'Date', 'Year', 'event', 'bird_id', 'target_index'] != ['Year', 'label', 'target_index', 'score', 'Site', 'event', 'bird_id', 'matched_xmin', 'xmax', 'Date', 'matched_ymax', 'matched_ymin']                                                                                                                      880,1         27%