_pkgdown.yml

navbar:
  components:
    articles:
      text: Articles
      menu:
      - text: Data Formats
        href: articles/data-formats.html
      - text: Dataset Summaries
        href: articles/dataset-summary.html
      - text: Installing MATSS on the HiPerGator
        href: articles/hipergator-install.html
reference:
  - title: "Creating a Research Compendium"
    contents:
      - create_MATSS_compendium
  - title: "Drake Plans"
    desc: "Functions to help build Drake plans"
    contents:
      - build_analyses_plan
      - build_datasets_plan
      - build_bbs_datasets_plan
      - build_biotime_datasets_plan
      - build_gpdd_datasets_plan
      - build_retriever_datasets_plan
      - analysis_wrapper
      - collect_analyses
  - title: "Configure Data Path"
    desc: "Functions to configure the data path for storing downloaded datasets"
    contents:
      - get_default_data_path
      - check_default_data_path
      - use_default_data_path
  - title: "Rdataretriever"
    desc: "Functions that use Rdataretriever to download and import data"
    contents:
      - download_datasets
      - import_retriever_data
      - install_retriever_data
  - title: "Get Data"
    desc: "Functions to load datasets"
    contents:
      - get_biotime_data
      - get_biotime_dataset_ids
      - get_bbs_route_region_data
      - get_cowley_lizards
      - get_cowley_snakes
      - get_gpdd_data
      - get_jornada_data
      - get_karoo_data
      - get_kruger_data
      - get_maizuru_data
      - get_mtquad_data
      - get_portal_rodents
      - get_sdl_data
      - get_sgs_data
      - process_biotime_dataset
      - correct_biotime_dataset
  - title: "Analysis Methods"
    desc: "Functions to compute analyses"
    contents:
      - ts_summary
      - summarize_df
      - summarize_vec
      - richness
      - temp_autocor
      - interpolate_obs
  - title: "Data Checking, Filtering, and Processing"
    desc: "Functions to check datasets, extract components, and preprocess them"
    contents:
      - check_data_format
      - get_times_from_data
      - get_effort_from_data
      - normalize_obs
      - normalize_times
      - normalize_effort
      - to_numeric_vector
      - prepare_bbs_ts_data
      - process_bbs_route_region_data
      - filter_bbs_ts
      - filter_bbs_species
      - combine_bbs_subspecies
  - title: "Datasets"
    desc: "Description of the built-in datasets"
    contents:
      - maizuru_data
      - dragons