Smoke Test #14
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| name: Smoke Test | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| test-package: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install system dependencies and R for macOS | |
| if: matrix.os == 'macos-latest' | |
| run: brew install xz | |
| shell: bash | |
| - name: Install system dependencies for Ubuntu | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y liblzma-dev libcurl4-openssl-dev | |
| shell: bash | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'release' | |
| - name: Install R packages | |
| run: | | |
| install.packages(c("arrow", "nanoarrow")) | |
| install.packages("exonr", repos = c("https://wheretrue.r-universe.dev", "https://cloud.r-project.org")) | |
| shell: Rscript {0} | |
| - name: Test exonr | |
| shell: Rscript {0} | |
| run: | | |
| library(exonr) | |
| # Read in an example file | |
| batch_reader <- exonr::read_fasta_file("exon/exon-core/test-data/datasources/fasta/test.fasta") | |
| # Convert to a data.frame | |
| batch_df <- as.data.frame(batch_reader) | |
| # Print the head of the dataframe | |
| print(head(batch_df)) |