DESCRIPTION

Package: dittoSeq
Type: Package
Title: User Friendly Single-Cell and Bulk RNA Sequencing Visualization
Version: 0.99.2
Author: Daniel Bunis
Maintainer: Daniel Bunis <daniel.bunis@ucsf.edu>
Description: A set of functions for generating publication-ready (sc)RNAseq figures with as simple of coding input as possible.  This package attempts to be colorblind friendly by default & novice-to-coding user-friendly.  It mimics and extends Seurat plotting capabilities, and enables side-by-side analysis of bulk and scRNAseq data through the creation of a Seurat-like S4 data structure for the analysis of bulk sequencing data.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.0
Depends: R (>= 3.6.0),
    ggplot2
Imports: methods,
    colorspace (>= 1.4),
    gridExtra,
    cowplot,
    reshape2,
    pheatmap,
    grDevices,
    ggrepel,
    ggridges,
    stats,
    utils
Suggests: plotly,
    testthat,
    Seurat (>= 2.2),
    DESeq2,
    SummarizedExperiment,
    edgeR,
    SingleCellExperiment,
    knitr,
    BiocStyle,
    scRNAseq
biocViews: 
    Software,
    Visualization,
    RNASeq,
    SingleCell,
    GeneExpression, 
    Transcriptomics
VignetteBuilder: knitr