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fixing spacing issue
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evagunawan committed Feb 5, 2025
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Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions README.md
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Expand Up @@ -174,12 +174,12 @@ spriggan_results
└── spades.fasta
```
Notable output files:
**spriggan_report.csv** - Summary table of each step in Spriggan.
**spriggan_multiqc_report.html** - HTML report generated by MultiQC.
**\*.contigs.fa** - Shovill assembly for each sample.
**\*.amr.tsv** - AMR genes identified in each sample by AMRFinderPlus.
**\*.mlst.tsv** - MLST scheme identified for each sample.
**Empty_samples.csv** - Lists any samples that do not have any reads and were removed from the pipeline.
**spriggan_report.csv** - Summary table of each step in Spriggan.
**spriggan_multiqc_report.html** - HTML report generated by MultiQC.
**\*.contigs.fa** - Shovill assembly for each sample.
**\*.amr.tsv** - AMR genes identified in each sample by AMRFinderPlus.
**\*.mlst.tsv** - MLST scheme identified for each sample.
**Empty_samples.csv** - Lists any samples that do not have any reads and were removed from the pipeline.

## Credits
Spriggan was written by Dr. [Kelsey Florek](https://github.com/k-florek), Dr. [Abigail C. Shockey](https://github.com/AbigailShockey), and [Eva Gunawan](https://github.com/evagunawan).
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