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  1. SLRfinder SLRfinder Public

    SLRfinder is a method for identifying candidate sex-linked regions (SLRs) based on heterozygosity and linkage disequilibrium (LD) clustering using population genomic data.

    R 4

  2. repolarize-vcf repolarize-vcf Public

    This code repolarizes a vcf file using one sample's genotypes as the ancestral state.

    R 1

  3. missing_data_PCA missing_data_PCA Public

    Simulation of population genetic data sets with missing data added to show potential bias on PCA plots.

    R 1

  4. kml2csv kml2csv Public

    This R script transfers point coordinates in a Google Earth .kml file to a csv file.

    R

  5. QTL_plate QTL_plate Public

    The R scripts used for the QTL analyses on the backcross Pungitius sticklebacks.

    R

  6. SexChromosome_ninespined_stickleback SexChromosome_ninespined_stickleback Public

    Scripts for the Evolution Letters paper "Sex chromosome turnover in hybridizing stickleback lineages".

    R