Task list

ReBase parser (Brian)
GeneBank and ReBase local storage solutions
General binary value to DNA Encoder (David)
General DNA to binary value Decoder (David)
BLAST Subprocess caller for similarity (Christian)
- may require clean up
XML output parser and re-entry into database (Zach)
Search...
- substring change count
- find initial mtch/config
- stochastically optimize
- more stuff
Google slides
Web something?
designer pitch
memoization + caching

Presentation content

Stuff to print for each step:
- Gene used
- Enzyme used
- Coordinate of enzyme usage

Name		Name	Last commit message	Last commit date
Latest commit History 98 Commits
data_files		data_files
ncbi-blast-2.7.1+		ncbi-blast-2.7.1+
.gitignore		.gitignore
AWRI1631_ABSV01000000_cds.fsa		AWRI1631_ABSV01000000_cds.fsa
LICENSE		LICENSE
README.md		README.md
Untitled.ipynb		Untitled.ipynb
blast.py		blast.py
databases.nhr		databases.nhr
databases.nin		databases.nin
databases.nog		databases.nog
databases.nsd		databases.nsd
databases.nsi		databases.nsi
databases.nsq		databases.nsq
encoder.py		encoder.py
fast.xml		fast.xml
fasta.fasta		fasta.fasta
fasta.fsa		fasta.fsa
fasta.xml		fasta.xml
fasta2.xml		fasta2.xml
gene_search.py		gene_search.py
magic_tree_maker.py		magic_tree_maker.py
main.py		main.py
neo4j_manager.py		neo4j_manager.py
rebase_parser.py		rebase_parser.py
rebase_to_tree.py		rebase_to_tree.py
strip_file.py		strip_file.py
test.txt		test.txt