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Add ExpData::clear_observations #2258

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merged 3 commits into from
Jan 8, 2024
Merged

Add ExpData::clear_observations #2258

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9556a41
Add ExpData::clear_observations
dweindl Jan 4, 2024
04f91e0
Merge branch 'develop' into ExpData_clear_observations
dweindl Jan 5, 2024
cb65c80
Merge branch 'develop' into ExpData_clear_observations
dweindl Jan 8, 2024
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7 changes: 7 additions & 0 deletions include/amici/edata.h
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Original file line number Diff line number Diff line change
Expand Up @@ -390,6 +390,13 @@ class ExpData : public SimulationParameters {
*/
realtype const* getObservedEventsStdDevPtr(int ie) const;

/**
* @brief Set all observations and their standard deviations to NaN.
*
* Useful, e.g., after calling ExpData::setTimepoints.
*/
void clear_observations();

/**
* @brief Arbitrary (not necessarily unique) identifier.
*/
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12 changes: 12 additions & 0 deletions src/edata.cpp
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Expand Up @@ -338,6 +338,18 @@ realtype const* ExpData::getObservedEventsStdDevPtr(int ie) const {
return nullptr;
}

void ExpData::clear_observations() {
std::fill(observed_data_.begin(), observed_data_.end(), getNaN());
std::fill(
observed_data_std_dev_.begin(), observed_data_std_dev_.end(), getNaN()
);
std::fill(observed_events_.begin(), observed_events_.end(), getNaN());
std::fill(
observed_events_std_dev_.begin(), observed_events_std_dev_.end(),
getNaN()
);
}

void ExpData::applyDimensions() {
applyDataDimension();
applyEventDimension();
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