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Add mixed bc and update docs#89

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cgilet merged 57 commits intoAMReX-Fluids:developmentAMReX-Fluids/incflo:developmentfrom cgilet:mixedBCcgilet/incflo:mixedBCCopy head branch name to clipboardMar 15, 2024

+1,109-118

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Commits on Jan 15, 2024

• Update make_eb_box() to use amrex::BoxIF. This allows specifying

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• Add fluid initial conditions where an EB splits the domain in two

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• WIP - start adding mixed BC option

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• fix trailing whitespace

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Commits on Jan 19, 2024

• Rename file to better reflect contents.

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• Add check for EB

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• WIP - add function to create mixedBC mask, although maybe it would

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• Rename file to better reflect contents.

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• Update make_eb_box() to use amrex::BoxIF. This allows specifying

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• Remove incflo set_velocity_bc functions in favor of using

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• Fix spacing

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• Update Make.package

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• Fixes to get compiling

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• Fix trailing whitespace

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• Fix CMakeLists.txt

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Commits on Jan 20, 2024

• Make it so only the inflow BCs get set in apply_nodal_projection

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Commits on Jan 22, 2024

• Merge branch 'consolidate_code' into mixedBC_inoutflow

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• Fix merge errors in incflo.H

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Commits on Jan 23, 2024

• WIP - Initial projection works for inputs.split

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• Fix whitespace

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• Remove debugging Write

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Commits on Jan 24, 2024

• Add Robin BCs to MAC proj

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• Fix mistakes in prob_init and BC mask setup

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• Add mixedBC problem to IncfloVelFill

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• Add mixed BCs to MAC velocities.

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• Don't forget to give mixed BC inflow vel in inputs

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Commits on Feb 7, 2024

• WIP - the mac and nodal proj work as expected for mixed BCs (given

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Commits on Feb 8, 2024

• Fix inaccurate print statement

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• Add check to make sure only Godunov with mixed BC

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Commits on Feb 12, 2024

• WIP - MAC velocity looks reasonable. Needs hydro changes currently

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• WIP - 2D mixed bc appears to work for vel. Needs cgilet hydro

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• Appears to work for 3D with multiple boxes. Needs cgilet hydro

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Commits on Feb 14, 2024

• Make scalar diffusion work with mixed BC. Plus various mixed bc

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Commits on Feb 15, 2024

• Stop setting EB covered to zero in InitialProjection. It's not

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• Get tracers working with mixed BC

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• Add option for internal flow in twocylinders EB

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• Some clean up

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• update inputs.split (mixed BC example)

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• more clean up

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Commits on Feb 21, 2024

• Remove unused member varibable introduced in initial attempts to

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Commits on Feb 22, 2024

• More clean up. Improve a few comments.

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Commits on Feb 23, 2024

• Fix big in mixed BC overset mask for Nodal proj. Need to set as

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Commits on Mar 5, 2024

• Make sure the density and tracer BCRecs are also updated for mixed

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• Clean up spacing

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• Clean up some compiler warnings

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Commits on Mar 6, 2024

• Fix clang-tidy warning

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Commits on Mar 7, 2024

• Properly reuse scalar diffusion solver with Robin BCs

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• Fix more compiler warnings.

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Commits on Mar 8, 2024

• Fix gpu compilation

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• Fix typo for probtype 1102

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• Fix const to quiet clang-tidy

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• In creating nodal overset mask for mixed BC, make sure null box has

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• For nodal projection, when filling the velocity don't treat mixed

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• Add mixed BC regression tests

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Commits on Mar 11, 2024

• To reuse the MacProjector with Robin BCs we must call updateCoeffs

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• Update Docs

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Commits on Mar 15, 2024

• Merge remote-tracking branch 'upstream/development' into mixedBC

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