update: update 0.4.6

HISTORY.rst

@@ -2,6 +2,8 @@
 History
 =======
 
+0.4.6 (2022-03-09)
+------------------
 0.4.5 (2022-03-02)
 ------------------
 0.4.0 (2022-02-03)

MANIFEST.in

@@ -13,4 +13,4 @@ recursive-include docs *.rst conf.py Makefile make.bat *.jpg *.png *.gif
 recursive-include stlearn/app *.txt
 recursive-include stlearn/app/templates *
 recursive-include stlearn/app/static *
-recursive-include stLearn/stlearn/tools/microenv/cci/databases/ *.txt
+recursive-include stlearn/tools/microenv/cci/databases *.txt

setup.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.4.5
+current_version = 0.4.6
 commit = True
 tag = True
 

setup.py

@@ -21,7 +21,7 @@
 setup(
     author="Genomics and Machine Learning lab",
     author_email="[email protected]",
-    python_requires=">=3.8",
+    python_requires=">=3.7",
     classifiers=[
         "Development Status :: 2 - Pre-Alpha",
         "Intended Audience :: Developers",
@@ -49,6 +49,6 @@
     test_suite="tests",
     tests_require=test_requirements,
     url="https://github.com/BiomedicalMachineLearning/stLearn",
-    version="0.4.5",
+    version="0.4.6",
     zip_safe=False,
 )

stlearn/__init__.py

@@ -2,7 +2,7 @@
 
 __author__ = """Genomics and Machine Learning lab"""
 __email__ = "[email protected]"
-__version__ = "0.4.5"
+__version__ = "0.4.6"
 
 
 from . import add

stlearn/tools/microenv/cci/databases/__init__.py

@@ -0,0 +1,7 @@
+# from .base import lr
+# from .base_grouping import get_hotspots
+# from . import het
+# from .het import edge_core, get_between_spot_edge_array
+# from .merge import merge
+# from .permutation import get_rand_pairs
+from .analysis import load_lrs, grid, run, adj_pvals, run_lr_go, run_cci