Merge branch 'fix-rm-temp' into refactor-bind-path-singularity

Clinical-Genomics · Aug 7, 2023 · 9c13b9b · 9c13b9b
2 parents 1eb45d3 + 9b04af9
commit 9c13b9b
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/BALSAMIC/snakemake_rules/annotation/vep.rule b/BALSAMIC/snakemake_rules/annotation/vep.rule
@@ -216,6 +216,7 @@ if [[ -f "{params.somatic_sv_observations}" ]]; then
     --in_occ Obs --out_occ somatic_obs --in_frq Frq --out_frq somatic_frq \
     --db {params.somatic_sv_observations} --query_vcf {input.vcf_sv_clinical_obs} > {params.vcf_somatic_obs}
     bgzip -l 9 -c {params.vcf_somatic_obs} > {output.vcf_sv_clinical};
+    rm {params.vcf_somatic_obs};
 else
     cp {input.vcf_sv_clinical_obs} {output.vcf_sv_clinical};
 fi