New script: Saphyr average concentration and CV calculation #760


	name: Push cg_lims image to Docker Hub on push event

	on: [pull_request]

	jobs:
	docker-image-push:
	runs-on: ubuntu-latest
	steps:
	- name: Check out git repository
	uses: actions/checkout@v2

	- name: Extract branch name and remove illegal chars
	id: get_branch_name
	shell: bash
	run: echo "##[set-output name=branch;]$(echo "$(tr "/" "-" <<<${GITHUB_REF#refs/heads/})")"

	- name: Login to Docker Hub
	uses: docker/login-action@v1
	with:
	username: ${{ secrets.DOCKER_USERNAME }}
	password: ${{ secrets.DOCKER_PASSWORD }}

	- name: Set up Docker Buildx
	id: buildx
	uses: docker/setup-buildx-action@v1

	- name: Build and push
	id: docker_build
	uses: docker/build-push-action@v2
	with:
	context: ./
	file: ./Dockerfile
	push: true
	tags: "clinicalgenomics/cg_lims-stage:${{steps.get_branch_name.outputs.branch}}, clinicalgenomics/cg_lims-stage:latest"

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