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ONT workflow EPPs #467

Closed
wants to merge 31 commits into from
Closed

ONT workflow EPPs #467

wants to merge 31 commits into from

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Karl-Svard
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Added

Changed

Fixed

Steps to consider while deploying

  • Configuration changes:
  • Documentation updates:
  • Inform users by email:

Review:

  • Code approved by
  • Tests executed on stage by: (Document the test done with screen shots and description.)
  • "Merge and deploy" approved by

This version is a:

  • MAJOR - when you make incompatible API changes
  • MINOR - when you add functionality in a backwards compatible manner
  • PATCH - when you make backwards compatible bug fixes or documentation/instructions

@Karl-Svard
add new sample udf checker epp
b98411c
@Karl-Svard
refactor aliquot volume script name
3ef97d6
@Karl-Svard
add new wip epp for updating sample volumes
298097f
@Karl-Svard
add wip ont calc amount script
5515a7b
@Karl-Svard
fixes for new calculate amount script
e644060
@Karl-Svard
add wip ont aliquot script
22a6d1f
@Karl-Svard
removed volume udf option
2724090
@Karl-Svard
test a new option for copying volumes
ca1cfba
@Karl-Svard
improve update volume epp
2e16217
@Karl-Svard
add new features after feedback
e5ad677
@Karl-Svard
merge master into branch
1a98b2b
@Karl-Svard
refactor ont aliquotation script and add some better error handling
945d530
@Karl-Svard
add wip sample sheet epp
f12cc06
@Karl-Svard
make the ont aliquot EPP more versitile with customizable udf names
3a1196f
@Karl-Svard
add ont json parser
8e94cbc
@Karl-Svard
add EPP for setting ONT seq settings
d932b11
@Karl-Svard
add ONT JSON parser to base
81f527d
@Karl-Svard
update date format in experiment name
5bf8c6c
@Karl-Svard
update samplesheet
362ece9
@Karl-Svard
add experiment name on artifact level
9b388f3
@Karl-Svard
add new EPP for calculating available material for seq reload
c9d56b1
@Karl-Svard
fix for None values
b95b6ba
@Karl-Svard
update udf name for ont run
cecf758
@Karl-Svard
missed one spot
488e5da
@Karl-Svard
fetch run ID from artifact instead
f806009
@Karl-Svard
change output types of ont json parser
9adf1e1
@Karl-Svard
update ONT sample sheet script
437c792
@Karl-Svard
patch
cdec3ab
@Karl-Svard
Add option to re-run input artifacts
7d3020f
@Karl-Svard
fix
39b592e
@Karl-Svard
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This PR grew insanely large. And we won't have to keep everything in one branch for testing purposes any longer. I will split them up and add links later as a new comment

@Karl-Svard Karl-Svard closed this Mar 22, 2024
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@AbiDalby AbiDalby Awaiting requested review from AbiDalby AbiDalby will be requested when the pull request is marked ready for review AbiDalby is a code owner

@idalindegaard idalindegaard Awaiting requested review from idalindegaard idalindegaard will be requested when the pull request is marked ready for review idalindegaard is a code owner

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@Karl-Svard