Code

ONT workflow EPPs#467

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Karl-Svard wants to merge 31 commits intomasterClinical-Genomics/cg_lims:masterfrom ont_wf_eppsClinical-Genomics/cg_lims:ont_wf_eppsCopy head branch name to clipboard

+1,130-9

Commits

Commits on Jan 7, 2024

• add new sample udf checker epp

  Karl-Svard

  committed
  b98411c

Commits on Jan 8, 2024

• refactor aliquot volume script name

  Karl-Svard

  committed
  3ef97d6

Commits on Jan 9, 2024

• add new wip epp for updating sample volumes

  Karl-Svard

  committed
  298097f

Commits on Jan 11, 2024

• add wip ont calc amount script

  Karl-Svard

  committed
  5515a7b

• fixes for new calculate amount script

  Karl-Svard

  committed
  e644060

• add wip ont aliquot script

  Karl-Svard

  committed
  22a6d1f

Commits on Jan 12, 2024

• removed volume udf option

  Karl-Svard

  committed
  2724090

• test a new option for copying volumes

  Karl-Svard

  committed
  ca1cfba

Commits on Jan 16, 2024

• improve update volume epp

  Karl-Svard

  committed
  2e16217

Commits on Jan 17, 2024

• add new features after feedback

  Karl-Svard

  committed
  e5ad677

Commits on Jan 24, 2024

• merge master into branch

  Karl-Svard

  committed
  1a98b2b

Commits on Jan 30, 2024

• refactor ont aliquotation script and add some better error handling

  Karl-Svard

  committed
  945d530

Commits on Jan 31, 2024

• add wip sample sheet epp

  Karl-Svard

  committed
  f12cc06

Commits on Feb 5, 2024

• make the ont aliquot EPP more versitile with customizable udf names

  Karl-Svard

  committed
  3a1196f

Commits on Feb 6, 2024

• add ont json parser

  Karl-Svard

  committed
  8e94cbc

• add EPP for setting ONT seq settings

  Karl-Svard

  committed
  d932b11

• add ONT JSON parser to base

  Karl-Svard

  committed
  81f527d

• update date format in experiment name

  Karl-Svard

  committed
  5bf8c6c

• update samplesheet

  Karl-Svard

  committed
  362ece9

Commits on Feb 15, 2024

• add experiment name on artifact level

  Karl-Svard

  committed
  9b388f3

Commits on Mar 6, 2024

• add new EPP for calculating available material for seq reload

  Karl-Svard

  committed
  c9d56b1

• fix for None values

  Karl-Svard

  committed
  b95b6ba

• update udf name for ont run

  Karl-Svard

  committed
  cecf758

• missed one spot

  Karl-Svard

  committed
  488e5da

• fetch run ID from artifact instead

  Karl-Svard

  committed
  f806009

• change output types of ont json parser

  Karl-Svard

  committed
  9adf1e1

Commits on Mar 9, 2024

• update ONT sample sheet script

  Karl-Svard

  committed
  437c792

Commits on Mar 12, 2024

• patch

  Karl-Svard

  committed
  cdec3ab

Commits on Mar 13, 2024

• Add option to re-run input artifacts

  Karl-Svard

  committed
  7d3020f

• fix

  Karl-Svard

  committed
  39b592e

• add WIP EPP for copying container values

  Karl-Svard

  committed
  3da2bee