SCExecute-1.3.1

• Fix issue with Cell-barcode tag logic for read-groups options

SCExecute-1.3.0

• Lots of additional template arguments to facilitate use in pipelines
• Restrict to multi-region (genic region(s) from genome annotation *.gtf file)
• Better runtime instrumentation
• CPU affinity locking - ensuring that running commands can only use a single CPU
• Cell-barcode only read-groups permitted for spliting BAM files
• Cell Ranger cell-barcode and umi-barcode extraction logic added

ReadCounts-2.4.0

• Better memory management, batch SNVs if necessary
• Can now count UMIs in a read-group (cell-barcode) not just number of reads
• read-group infrastructure now label logic for extracting tags as for Cell-Barcodes or UMIs
• Predefined cell-barcode and UMI-barcode logic for CellRanger in addition to UMI-tools and STARsolo.

SCExecute-1.2.5

• Make all templated relative filenames relative to working directory
• Fix bug in mini-tool for min-depth BAMs
• Ensure elapsed time seconds have leading zero

SCExecute-1.2.4

• Add options for templated working directory and output/error files
• Add elapsed time for each invocation of command
• Fix interleaving of logging output using a lock
• Add mini-tool for extracting intervals and BAMs with minimum aligned read-depth

SCReadCounts-1.1.10

• Fix issue with pileup module, causing startup errors

ReadCounts-2.3.9

• Fix issue with pileup module, causing startup errors

SCExecute-1.2.3

• Fix bug in handling of limit argument

SCExecute-1.2.2

• Fix error in MacOS version due to uncommitted update to internal API

SCExecute-1.2.1

• Fix how default limit parameter is displayed
• Ensure index argument is output in the initial logs
• Update screenshots