Add Instructions

bats_ai/core/views/recording.py

@@ -10,7 +10,7 @@
 from ninja.files import UploadedFile
 from ninja.pagination import RouterPaginated
 
-from bats_ai.core.models import Annotations, Recording, Species, TemporalAnnotations
+from bats_ai.core.models import Annotations, Recording, Species, Spectrogram, TemporalAnnotations
 from bats_ai.core.views.species import SpeciesSchema
 from bats_ai.core.views.temporal_annotations import (
     TemporalAnnotationSchema,
@@ -103,6 +103,10 @@ def create_recording(
         comments=payload.comments,
     )
     recording.save()
+    # Start generating recording as soon as created
+    # this creates the spectrogram during the upload so it is available immediately afterwards
+    # it will make the upload process longer but I think it's worth it.
+    Spectrogram.generate(recording)
     return {'message': 'Recording updated successfully', 'id': recording.pk}
 
 

client/INSTRUCTIONS.md

@@ -0,0 +1,77 @@
+# Instructions
+
+The following are instructions on how to use this application to share and
+annotate bat recordings.
+
+## Uploading Data
+
+When you first login, got to the 'Recordings' tab to view two lists of recordings.
+The first list is a list of recordings you have uploaded.
+You can add new data by clicking the 'Upload+' button and choosing a local
+file on your system.
+A date and name are required for uploading new data.
+Optional data can be added including location/ equipment and comments about the file
+
+**Public** - using this checkbox will share the data with all other users within the system
+
+Once others have have made annotations on your own files that are public
+you can view them by clicking on the name
+
+
+## Others Shared Data
+
+This second list of recording files include files that were made public
+by other users or the system admin
+
+This will allow you create annotations on other's files by
+clicking on the **Name** field for the annotation file
+
+## Annotation Editor
+
+### Viewing Annotations
+
+The annotation editor has two main views of the spectrogram from the recording:
+
+**Main View** - This main view has the full annotation zoomed in and can be
+dragged/panned using left click and can be zoomed using the mousewheel.
+At the top of the screen are the current frequence and time for the mouse cursor.
+On the upper right side of the area are buttons for adding/removing information
+
+**Bat Icon** - turns on/off species annotations for any bounding boxes on the screen
+**MS Icon** - will toggle millisecond text annotations to all boxes 
+**KHZ Icon** - will toggle frequency labels for each bounding box on the screen
+**Grid Icon** - toggles gride display across the spectrogram
+**Compressed Icon** - toggles on/off the compressed view for the spectrogram
+
+### Interactions
+
+**Clicking** - clicking inside of annotation will automatically select it.
+It will become cyan in color and the annotation will be selected in either
+the Sequence or Pulse list.
+
+**Right Clicking** - Right clicking on an annotation will swap it into 'Edit Mode'
+In 'Edit Mode' the annotation bounds can be modified by clicking on the corners
+and dragging them around.
+
+#### Full Spectrogram View
+
+Below the main view is a thumbnail of the full spectrogram.  This view shows 
+the entire spectrogram.
+The **yellow** bounding box is used to show the current location and zoom
+level for the **Main View**.
+Clicking on and dragging in the thumbnail view will pan and jump instanlty to
+that area in the main view.
+
+#### Sequence and Pulse Annotations
+
+On the right side of the screen is a list of the Sequence and Pulse annotations.
+These are tabbed views that can be switched between by clicking on the Tab Name.
+Annotations can be selected by clicking on them.
+When an annotation is selected it can be edited including the species comments and other information.
+
+**Sequence** - A Sequence annotation is typically used to group multiple pulses together
+This can be drawn by clicking on the 'Add+' button and drawing a box around the pulses.
+Once created it is shown at the top of the screen
+
+**Pulse** - A Pulse annotation is an annotation around a single pulse in the system.
+These have a fequency range as well a time range.

client/package.json

@@ -23,13 +23,15 @@
     "geojs": "^1.11.1",
     "lodash": "^4.17.21",
     "vue": "^3.3.1",
+    "vue-markdown-render": "^2.1.1",
     "vue-router": "^4.0.12",
     "vuetify": "^3.3.12"
   },
   "devDependencies": {
     "@types/geojson": "^7946.0.13",
     "@types/jest": "^27.4.1",
     "@types/lodash": "^4.14.202",
+    "@types/markdown-it": "^13.0.7",
     "@vitejs/plugin-vue": "^2.2.0",
     "@vue/eslint-config-typescript": "^10.0.0",
     "@vuetify/vite-plugin": "^1.0.0-alpha.10",

client/src/views/HomePage.vue

@@ -1,9 +1,26 @@
 <script lang="ts">
-import { defineComponent } from 'vue';
-
+import { defineComponent, onMounted, ref } from 'vue';
+import VueMarkdown from 'vue-markdown-render';
+import axios from 'axios';
 export default defineComponent({
+  components: {
+    VueMarkdown,
+  },
   setup() {
-    return { };
+    const source = ref('');
+    const     fetchMarkdownContent = () => {
+      const url = 'https://raw.githubusercontent.com/Kitware/batai/main/INSTRUCTIONS.md'; // Replace with your GitHub URL
+      axios.get(url)
+        .then(response => {
+          source.value = response.data;
+        })
+        .catch(error => {
+          console.error('Error fetching markdown content:', error);
+        });
+    };
+    onMounted(() => fetchMarkdownContent());
+
+    return { source };
   },
 });
 </script>
@@ -13,8 +30,8 @@ export default defineComponent({
     <v-card-title>
       Bat-AI
     </v-card-title>
-    <v-card-text>
-      For right now please select "Files" to open a specific file in the spectrogram viewer or go to "Species" to view a list of species in the system.
+    <v-card-text class="ma-5">
+      <vue-markdown :source="source" />
     </v-card-text>
   </v-card>
 </template>