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Add support for setting up Python through renv #15

Merged
merged 133 commits into from
May 26, 2023
Merged

Add support for setting up Python through renv #15

merged 133 commits into from
May 26, 2023

Commits on Mar 16, 2023

  1. make tests quieter; report timings of setup

    @zkamvar
    zkamvar committed Mar 16, 2023
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  2. add test for reference page/glossary

    @zkamvar
    zkamvar committed Mar 16, 2023
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  3. implement glossary provisioning

    @zkamvar
    zkamvar committed Mar 16, 2023
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  4. skip reference in resources dropdown

    @zkamvar
    zkamvar committed Mar 16, 2023
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  5. anchor regex

    @zkamvar
    zkamvar committed Mar 16, 2023
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  6. add reference to expected learner files

    @zkamvar
    zkamvar committed Mar 16, 2023
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  7. clean up trailing whitespace

    @zkamvar
    zkamvar committed Mar 16, 2023
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  8. bump version; update NEWS

    @zkamvar
    zkamvar committed Mar 16, 2023
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  9. explicitly set utils:: for capture.output

    @zkamvar
    zkamvar committed Mar 16, 2023
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  10. Merge pull request carpentries#412 from carpentries/provision-references 

    Provision references.md to fix Glossary 404; Maintainer QOL improvements
    @zkamvar
    zkamvar authored Mar 16, 2023
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  11. do not ignore references from sidebar

    @zkamvar
    zkamvar committed Mar 16, 2023
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  12. re-snap tests

    @zkamvar
    zkamvar committed Mar 16, 2023
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  13. update template default values to include fixmes

    @zkamvar
    zkamvar committed Mar 16, 2023
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  14. Merge pull request carpentries#413 from carpentries/provision-references 

    allow references file to be included in dropdown
    @zkamvar
    zkamvar authored Mar 16, 2023
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  15. Update DESCRIPTION

    @jcolomb
    jcolomb authored Mar 16, 2023
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  16. Merge pull request carpentries#414 from jcolomb/patch-2 

    Update DESCRIPTION
    @zkamvar
    zkamvar authored Mar 16, 2023
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Commits on Mar 17, 2023

  1. add patch for {renv} 0.17.1 

    This will fix carpentries#415
    @zkamvar
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  2. bump version; add news

    @zkamvar
    zkamvar committed Mar 17, 2023
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  3. Merge pull request carpentries#416 from carpentries/update-cache-repo… 

    …rting

Update cache reporting
    @zkamvar
    zkamvar authored Mar 17, 2023
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  4. bump version to dev

    @zkamvar
    zkamvar committed Mar 17, 2023
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  5. Merge pull request carpentries#417 from carpentries/bump-version 

    bump version to dev
    @zkamvar
    zkamvar authored Mar 17, 2023
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Commits on Mar 21, 2023

  1. update function name in the text to match code block

    @tobyhodges
    tobyhodges authored Mar 21, 2023
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Commits on Mar 22, 2023

  1. Update contributing-template.txt

    @jcolomb
    jcolomb authored Mar 22, 2023
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  2. Update inst/templates/contributing-template.txt

    @zkamvar
    zkamvar authored Mar 22, 2023
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  3. remove argument from text

    @zkamvar
    zkamvar authored Mar 22, 2023
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  4. Merge pull request carpentries#419 from jcolomb/main 

    there was an issue with numbered list
    @zkamvar
    zkamvar authored Mar 22, 2023
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  5. Merge pull request carpentries#418 from tobyhodges/patch-2 

    update function name in the text to match code block
    @zkamvar
    zkamvar authored Mar 22, 2023
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  6. update workflows to give explicit permissions

    @zkamvar
    zkamvar committed Mar 22, 2023
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  7. Merge pull request carpentries#421 from carpentries/update-workflows-… 

    …2023-03

update workflows to give explicit permissions
    @zkamvar
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Commits on Mar 23, 2023

  1. move rstudio/renv to Config/Needs/check

    @zkamvar
    zkamvar committed Mar 23, 2023
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  2. Merge pull request carpentries#422 from carpentries/adjust-dep-source 

    move rstudio/renv to Config/Needs/check
    @zkamvar
    zkamvar authored Mar 23, 2023
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Commits on Mar 24, 2023

  1. add workaround for renv 

    This will test rstudio/renv#1177
    @zkamvar
    zkamvar committed Mar 24, 2023
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  2. fix number

    @zkamvar
    zkamvar committed Mar 24, 2023
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  3. Merge pull request carpentries#423 from carpentries/workaround-renv-0… 

    ….17.2

add workaround for renv
    @zkamvar
    zkamvar authored Mar 24, 2023
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  4. bump version

    @zkamvar
    zkamvar committed Mar 24, 2023
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  5. Merge pull request carpentries#424 from carpentries/version-bump 

    bump version
    @zkamvar
    zkamvar authored Mar 24, 2023
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Commits on Apr 4, 2023

  1. update templates

    @zkamvar
    zkamvar committed Apr 4, 2023
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  2. update readme template to not use h1

    @zkamvar
    zkamvar committed Apr 4, 2023
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  3. bump version; document; news

    @zkamvar
    zkamvar committed Apr 4, 2023
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  4. re-add covr

    @zkamvar
    zkamvar committed Apr 4, 2023
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  5. Apply suggestions from code review 

    Co-authored-by: Toby Hodges <[email protected]>
    @zkamvar @tobyhodges
    zkamvar and tobyhodges authored Apr 4, 2023
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  6. use fixme for repo

    @zkamvar
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  7. Merge pull request carpentries#428 from carpentries/fix-license-contr… 

    …ibuting

Fix Templates; update dependencies
    @zkamvar
    zkamvar authored Apr 4, 2023
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  8. add 404 page support 

    This will fix carpentries#268
    @zkamvar
    zkamvar committed Apr 4, 2023
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  9. Merge pull request carpentries#429 from carpentries/add404 

    add 404 page support
    @zkamvar
    zkamvar authored Apr 4, 2023
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Commits on Apr 5, 2023

  1. add tests for 404 page re relative/absolute links

    @zkamvar
    zkamvar committed Apr 5, 2023
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  2. add function to detect if we are in production

    @zkamvar
    zkamvar committed Apr 5, 2023
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  3. allow 404 page to use absolute paths for prod

    @zkamvar
    zkamvar committed Apr 5, 2023
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  4. fix path bug in serve 

    This allows us to deploy from a separate directory
    @zkamvar
    zkamvar committed Apr 5, 2023
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  5. clean white space from yaml utilities

    @zkamvar
    zkamvar committed Apr 5, 2023
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  6. update NEWS; bump version

    @zkamvar
    zkamvar committed Apr 5, 2023
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  7. make sure we are dealing with a single call item

    @zkamvar
    zkamvar committed Apr 5, 2023
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  8. fix 404 menu links

    @zkamvar
    zkamvar committed Apr 5, 2023
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  9. move sidebar function to sidebar file

    @zkamvar
    zkamvar committed Apr 5, 2023
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  10. add note for later

    @zkamvar
    zkamvar committed Apr 5, 2023
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  11. whoops

    @zkamvar
    zkamvar committed Apr 5, 2023
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  12. Merge pull request carpentries#431 from carpentries/update-404-page 

    Update 404 page
    @zkamvar
    zkamvar authored Apr 5, 2023
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Commits on Apr 27, 2023

  1. add tests that will pass once issue is fix 

    This will test for carpentries#445
    @zkamvar
    zkamvar committed Apr 27, 2023
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Commits on Apr 28, 2023

  1. Set dev version

    @milanmlft
    milanmlft committed Apr 28, 2023
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  2. update search to find explicit figures 

    This will address carpentries#445
    @zkamvar
    zkamvar committed Apr 28, 2023
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  3. bump version; update NEWS

    @zkamvar
    zkamvar committed Apr 28, 2023
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Commits on May 2, 2023

  1. Add use_python() helper

    @milanmlft
    milanmlft committed May 2, 2023
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  2. Add py_install() helpeer to add Python dependencies

    @milanmlft
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Commits on May 3, 2023

  1. Reactivate renv profile after adding Python 

    Workaround for rstudio/renv#1217
    @milanmlft
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  2. Make sure Python dependencies also get restored by manage_deps()

    @milanmlft
    milanmlft committed May 3, 2023
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  3. Add option to set up Python in create_lesson()

    @milanmlft
    milanmlft committed May 3, 2023
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  4. Set working directory while setting up Python 

    Avoids some undesirable renv side effects.
    @milanmlft
    milanmlft committed May 3, 2023
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  5. Update documentation for create_lesson()

    @milanmlft
    milanmlft committed May 3, 2023
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  6. Update documentation for use_python()

    @milanmlft
    milanmlft committed May 3, 2023
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  7. Reoxygenize

    @milanmlft
    milanmlft committed May 3, 2023
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  8. Add examples for Python usage

    @milanmlft
    milanmlft committed May 3, 2023
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  9. Add unit tests for Python integration

    @milanmlft
    milanmlft committed May 3, 2023
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  10. Also test that manage_deps() plays nice with Python integration

    @milanmlft
    milanmlft committed May 3, 2023
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  11. Document

    @zkamvar
    zkamvar committed May 3, 2023
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Commits on May 5, 2023

  1. apply fix for mysterious serve() errors 

    This will fix carpentries#450
    @zkamvar
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  2. clean up serve a bit

    @zkamvar
    zkamvar committed May 5, 2023
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  3. bump version and news

    @zkamvar
    zkamvar committed May 5, 2023
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  4. Merge pull request carpentries#451 from carpentries/fix-serve 

    make serve() not always fail
    @zkamvar
    zkamvar authored May 5, 2023
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  5. remove test for building markdown via utils-callr

    @zkamvar
    zkamvar committed May 5, 2023
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  6. move shortcut into build_episode_md() 

    This will fix carpentries#442
    @zkamvar
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  7. Merge pull request carpentries#452 from carpentries/fix-build-location 

    move markdown shortcut to `build_episode_md()`
    @zkamvar
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Commits on May 12, 2023

  1. Include break time in timings 

    I did not test this!
    @bencomp
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Commits on May 16, 2023

  1. allow {renv} to produce no messages 

    This will begin to address carpentries#457
    @zkamvar
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  2. Use default break length of 0 minutes 

    Co-authored-by: Zhian N. Kamvar <[email protected]>
    @bencomp @zkamvar
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  3. engage verbosity in {renv} for tests 

    This will fix carpentries#457
    @zkamvar
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  4. fix one last renv error

    @zkamvar
    zkamvar committed May 16, 2023
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  5. Reference "break" in YAML struct correctly 

    Since `break` is a keyword, referencing `yaml$break` broke...

Co-authored-by: Zhian N. Kamvar <[email protected]>
    @bencomp @zkamvar
    bencomp and zkamvar authored May 16, 2023
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  6. bump version; add news

    @zkamvar
    zkamvar committed May 16, 2023
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  7. fix withr test for ubuntu

    @zkamvar
    zkamvar committed May 16, 2023
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  8. Merge pull request carpentries#458 from carpentries/fix-renv-2023-05 

    allow {renv} to produce no messages
    @zkamvar
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  9. Merge pull request carpentries#455 from bencomp/437-break-times 

    Include break time in timings
    @zkamvar
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  10. update get_syllabus test; add ben 

    Note: I switched the warning test to use a snapshot because I was
running into something similar to r-lib/testthat#1646
    @zkamvar
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  11. Merge pull request carpentries#460 from carpentries/add-test-2023-05-16 

    add test for break timing
    @zkamvar
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  12. allow serve to modify server settings 

    This will fix carpentries#459
    @zkamvar
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  13. Merge branch 'main' into add-servr-options

    @zkamvar
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  14. Merge pull request carpentries#461 from carpentries/add-servr-options 

    allow serve to modify server settings
    @zkamvar
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Commits on May 17, 2023

  1. Add Ben's ORCID

    @bencomp
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  2. Merge pull request carpentries#462 from bencomp/fix/bens-name 

    Add Ben's ORCID
    @zkamvar
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  3. Merge branch 'main' into use_python

    @milanmlft
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  4. add date to news; add CRAN skipper in CI test

    @zkamvar
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  5. Merge pull request carpentries#464 from carpentries/fix-universe-failure 

    add date to news; add CRAN skipper in CI test
    @zkamvar
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Commits on May 18, 2023

  1. first pass at fixing ids for callouts

    @zkamvar
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  2. ensure the same loaded pandoc version is used

    @zkamvar
    zkamvar committed May 18, 2023
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  3. add test for callouts

    @zkamvar
    zkamvar committed May 18, 2023
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  4. Merge pull request carpentries#466 from carpentries/use-loaded-pandoc… 

    …-465

ensure the same loaded pandoc version is used
    @zkamvar
    zkamvar authored May 18, 2023
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  5. can't run the tests without the test file

    @zkamvar
    zkamvar committed May 18, 2023
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  6. make lua work

    @zkamvar
    zkamvar committed May 18, 2023
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  7. make callout transformation work

    @zkamvar
    zkamvar committed May 18, 2023
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  8. clean up lua again

    @zkamvar
    zkamvar committed May 18, 2023
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Commits on May 19, 2023

  1. Merge branch 'main' into fix-div-ids-454

    @zkamvar
    zkamvar committed May 19, 2023
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  2. bump news

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  3. Merge pull request carpentries#467 from carpentries/fix-div-ids-454 

    fix block anchors
    @zkamvar
    zkamvar authored May 19, 2023
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  4. trim ws

    @zkamvar
    zkamvar committed May 19, 2023
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  5. add note to utils-aggregate

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    zkamvar committed May 19, 2023
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  6. adjust XPath for instructor notes aggregation 

    This will address carpentries#463
    @zkamvar
    zkamvar committed May 19, 2023
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  7. process instructor note headings to give linkback

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  8. Merge pull request carpentries#468 from carpentries/add-instructor-no… 

    …te-headings-463

add headings to instructor notes summary
    @zkamvar
    zkamvar authored May 19, 2023
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  9. Merge branch 'main' into fix-image-processing-445

    @zkamvar
    zkamvar authored May 19, 2023
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  10. make sure figure parsing works for pandoc 3

    @zkamvar
    zkamvar committed May 19, 2023
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  11. add test for classes

    @zkamvar
    zkamvar committed May 19, 2023
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  12. add figure class to all images

    @zkamvar
    zkamvar committed May 19, 2023
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  13. makesure to process lonely HTML figures

    @zkamvar
    zkamvar committed May 19, 2023
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  14. update image aggregation to retain behaviour

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    zkamvar committed May 19, 2023
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  15. Merge pull request carpentries#446 from carpentries/fix-image-process… 

    …ing-445

Only process standalone images into figures
    @zkamvar
    zkamvar authored May 19, 2023
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  16. bump version; add news

    @zkamvar
    zkamvar committed May 19, 2023
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  17. add date of release

    @zkamvar
    zkamvar committed May 19, 2023
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  18. Merge pull request carpentries#469 from carpentries/release-0.12.0 

    bump version; add news
    @zkamvar
    zkamvar authored May 19, 2023
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Commits on May 22, 2023

  1. Refactor: move reticulate installation to separate helper

    @milanmlft
    milanmlft committed May 22, 2023
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  2. Improve tests, add helpers to manage renv during testing

    @milanmlft
    milanmlft committed May 22, 2023
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  3. Use requireNamespace() instead of require()

    @milanmlft
    milanmlft committed May 22, 2023
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  4. Merge branch 'main' into use_python

    @milanmlft
    milanmlft committed May 22, 2023
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  5. Set dev version

    @milanmlft
    milanmlft committed May 22, 2023
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  6. Skip manage_deps() tests on Windows

    @milanmlft
    milanmlft committed May 22, 2023
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