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Release 0.16.2#1421

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Merged

richardjgowers merged 40 commits intomasterMDAnalysis/mdanalysis:masterfrom release-0.16.2MDAnalysis/mdanalysis:release-0.16.2Copy head branch name to clipboardJun 27, 2017

+1,260-673

Commits

Commits on Jun 3, 2017

• Started version 0.16.2

  richardjgowers

  committed
  a164830

Commits on Jun 4, 2017

• Merge pull request #1381 from MDAnalysis/start-0162

  Show description for 805c6c2
  kain88-de

  authored
  805c6c2

• change definition of tests (#1382)

  kain88-de

  authored
  a0d61f9

Commits on Jun 6, 2017

• update conda badge (#1386)

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  kain88-de

  authored and

  richardjgowers

  committed
  7652710

Commits on Jun 12, 2017

• Aesthetic fixes to test_gro

  Show description for efd9fc5
  richardjgowers

  committed
  efd9fc5

Commits on Jun 13, 2017

• Added tests for issue #1395

  

  richardjgowers

  authored and

  orbeckst

  committed
  6a5fa2c

• Added lib.util.ltruncate_integer

  

  richardjgowers

  authored and

  orbeckst

  committed
  930bb63

• Changed coordinate writers to use ltruncate_int

  Show description for abd205b
  

  richardjgowers

  authored and

  orbeckst

  committed
  abd205b

• Merge pull request #1396 from MDAnalysis/issue-1395-gro_resid_truncate

  Show description for 3e4a973
  orbeckst

  authored
  3e4a973

• use correct int types

  Show description for 39ad792
  

  rathann

  authored and

  orbeckst

  committed
  39ad792

• relax test_symmetry test due to lower precision on 32bit

  

  rathann

  authored and

  orbeckst

  committed
  8641226

• More work on making indexing arrays use intp (#1362)

  Show description for eed7761
  

  richardjgowers

  authored and

  orbeckst

  committed
  eed7761

Commits on Jun 14, 2017

• Merge pull request #1393 from MDAnalysis/issue-1362-int_types

  Show description for 6e6aa9d
  orbeckst

  authored
  6e6aa9d

• Explicitly define __hash__ for groups

  Show description for e3d5818
  

  jbarnoud

  authored and

  orbeckst

  committed
  e3d5818

• Merge pull request #1398 from MDAnalysis/issue-1397-group-hash

  Show description for ebe2b84
  orbeckst

  authored
  ebe2b84

Commits on Jun 17, 2017

• Use common setup script rather than OS specific ones (#1408)

  

  bsipocz

  authored and

  kain88-de

  committed
  9dc1737

• update copyright year

  

  kain88-de

  authored and

  orbeckst

  committed
  785cfc4

Commits on Jun 19, 2017

• fix int type in asserts in TestDownshiftArrays (#1410)

  Show description for 1f36502
  

  rathann

  authored and

  richardjgowers

  committed
  1f36502

• Break build packagewise (#1370)

  Show description for 49496c3
  

  utkbansal

  authored and

  richardjgowers

  committed
  49496c3

Commits on Jun 21, 2017

• add deprecation warnings for API changes

  Show description for 0a37e9e
  

  orbeckst

  authored and

  richardjgowers

  committed
  0a37e9e

• deprecated core.Timeseries module

  richardjgowers

  committed
  bd3b4df

• Deprecated DCDReader.correl

  richardjgowers

  committed
  e9784a7

• mention optional/full dependencies in docs

  Show description for 6e0abb0
  

  orbeckst

  authored and

  richardjgowers

  committed
  6e0abb0

• removed top-level imports of Timeseries

  Show description for 250ed47
  

  orbeckst

  authored and

  richardjgowers

  committed
  250ed47

• new MDAnalysisTests.core.util.assert_nowarns() function

  

  orbeckst

  authored and

  richardjgowers

  committed
  c238a40

• make instant selectors emit DeprecationWarning

  Show description for 3de936c
  

  orbeckst

  authored and

  richardjgowers

  committed
  3de936c

• fix sphinx warnings

  

  kain88-de

  authored and

  richardjgowers

  committed
  3e57373

• add getitem warning message

  

  kain88-de

  authored and

  richardjgowers

  committed
  fae031e

• use explicit deprecation warning

  

  kain88-de

  authored and

  richardjgowers

  committed
  b6646da

• test for no warnings raised by AtomGroup.segid

  Show description for e15f1be
  

  orbeckst

  authored and

  richardjgowers

  committed
  e15f1be

• minor cleanups in tests

  

  orbeckst

  authored and

  richardjgowers

  committed
  abc11e6

• AtomGroup.__getitem__ depreaction warning: added removal release

  

  orbeckst

  authored and

  richardjgowers

  committed
  84354d8

• removed explicit DeprecationWarning for AtomGroup["name"]

  Show description for 50f5d5a
  

  orbeckst

  authored and

  richardjgowers

  committed
  50f5d5a

• only issue _get_named_atom warning on successful call

  Show description for e24da32
  

  kain88-de

  authored and

  richardjgowers

  committed
  e24da32

• make scipy and matplotlib full dependencies (#1159)

  

  orbeckst

  authored and

  kain88-de

  committed
  fbc1688

• scipy and matplotlib are imported at top in analysis

  Show description for 4734057
  

  orbeckst

  authored and

  kain88-de

  committed
  4734057

• removed conditional skipping of tests when scipy or matplotlib are missing

  

  orbeckst

  authored and

  kain88-de

  committed
  12a795e

• minor clean ups

  kain88-de

  committed
  85c0c56

Commits on Jun 24, 2017

• add @utkbansal to changelog

  kain88-de

  committed
  f846427

Commits on Jun 27, 2017

• Merge branch 'master' into release-0.16.2

  Show description for ae72fe9
  richardjgowers

  committed
  ae72fe9