Release notes v20240229
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What's New
1. CVX
- The vocabulary has been updated according to the 2023AB version of the UMLS source.
- New CVX vaccines have been added (codes 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317).
2. RxNorm
- The vocabulary has been updated to the January 2024 version.
3. RxNorm Extension
- The indeterminacy of the BuildRxE script, which is used for the construction of the RxNorm Extension concepts, has been fixed in this release. Previously, multiple runs of BuildRxE with the same input resulted in outputs with 1-2% differences between runs. It was one of the reasons for duplicates in the RxNorm Extension vocabulary.
4. NDC/SPL
- The vocabulary has been updated to the February 2024 version, effective from February 25th, 2024.
- Bug fixing of reported issues - NDC devices were mapped to drugs.
5. SNOMED package
- SNOMED has been updated according to the following versions of its modules:
2023-07-31 SNOMED CT International;
2023-09-01 SNOMED CT US Edition;
2023-09-27 SNOMED CT UK Edition. - SNOMED UK Drug Extension Module has been excluded from SNOMED OMOP vocabularies. Concepts that belonged to this module have been deprecated and linked to their duplicates in the dm+d vocabulary. Their concept codes and names have been replaced by placeholders to avoid misuse.
On the other hand, dm+d concepts in the Device domain, previously mapped to the SNOMED UK Drug Extension Module, have become standard. Gemscript Devices, previously mapped to SNOMED, have been remapped to dm+d.
UK Drug Extension concepts in the Route domain have been de-standardized and mapped to standard Routes that belong to other SNOMED Modules. - Validity dates assignment for concepts has been improved and now fully corresponds to the source data.
- Concept class Clinical Finding has been split into Disorder and Clinical Finding. Thus, all Disorders are assigned with Condition domain (except allergies), and Clinical Findings accommodate concepts in the Condition, Observation, and Measurement domains.
- Concepts that belong to Attribute, Location (except countries), Social Context (except concepts that carry the semantics of relatives, religion, occupation), Physical Force, and Physical Object (except concepts in the Device domain) concept classes have been de-standardized.
- Domain assignment has been improved to achieve better accuracy. Thus, concepts ‘Positive’, ‘Negative’, and ‘Malignant’ have been moved from Spec Disease Status to the Meas Value domain, and countries have been moved to the Geography domain.
- Previously, not all replacement relationships to standard concepts were followed by the respective ‘Maps to’ links due to incorrect algorithms. Now this problem is fixed.
- Cleanup of mapping following ‘Concept poss_eq to’ relationships has been performed and its accuracy has been improved.
- Pre-coordinated concepts that represent the results of evaluation procedures have been split and mapped to Measurements and their value. Concepts that cannot be properly mapped remain standard concepts in the Measurement domain.
- Pre-coordinated concepts that represent allergies were split and mapped to ‘Allergic disposition’ + causative agent in a post-coordinated way.
- Concepts that belong to Observable Entity and Procedure concept classes in most cases represented semantic duplicates in the Measurement domain. According to SNOMED official documentation, the deduplication of Measurements should be performed towards Observable Entities as these concepts are supposed to represent the result of the evaluation procedure. However, we noticed that currently, most measurements in the Observable Entity concept class belong to the UK Clinical Extension Module and their hierarchy is much less complete than the hierarchy of Procedures. In such cases, we have built ‘Maps to’ relationships in the opposite direction -from Observable Entities to Procedures. If Observable Entity concepts belong to SNOMED CT Core Module they remain standard with the duplicative Procedure concepts mapped to them.
- Deduplication in the Measurement domain included mapping concepts in the Observable Entity concept class to their duplicates in the Staging/Scales concept class.
- Secondary neoplasm concepts have been mapped to the Cancer Modifier.
- Concepts in Race and Provider domains have been mapped to standard concepts in the respective domains.
- The load_stage has been significantly refactored, which results in a more straightforward and fast release process in future.
6. PPI
- New modules (Behavioral Health and Personality and Emotional Health History and Wellbeing) have been introduced.
- The Mental Health and Well-Being Module has been deprecated.
7. HCPCS
- HCPCS has been updated according to the version effective from January 2024.
- 39 concepts have been destandardised and mapped over to the concepts in the respective domains.
- 31 concepts have been destandardized as they present no information or contain negative information.
- Concepts that previously were assigned the Visit and Provider domains according to their mapping were moved to the Observation domain according to the Community’s request.
- Domain assignment according to the domains of the target concepts has been deleted. This logic led to imprecise domain assignment and non-compliance with the concept semantics. Now domains are assigned according to concept semantics exclusively.
All HCPCS concepts in the Drug domain should be non-standard as HCPCS is not a standard vocabulary for Drugs. All HCPCS concepts in the Drug domain are supposed to be mapped to standard concepts in the Drug domain. If concepts cannot be mapped due to lack of specificity, they are assigned with Procedure domain, embedded into the hierarchy of Procedures, and remain standard. - 3 concepts that belong to the Device domain have been mapped to SNOMED lost their mappings and became standard.
- In the course of release one standard concept previously embedded into the hierarchy of SNOMED has lost its hierarchical relationships as it has been mapped over to the standard concept in the Procedure domain and destandardized.
HCPCS code ‘J9321, Injection, pemetrexed (sandoz) not therapeutically equivalent to J9305, 10 mg’ was added on 2023-07-01 and subsequently deleted as a duplicate of code J9297. On 2024-01-01 this concept code was reused and assigned with another description: ‘‘J9321, Injection, epcoritamab-bysp, 0.16 mg’. As the previous concept code was initially added by mistake as duplicative and deleted by the source in the scope of the same source version, we assumed that it was not widely presented in the raw data and that the new brand-specific concept code would be more actively used. In this case, we do not preserve the old code description as an exception to our general logic.
8. ICD10PCS
- Vocabulary has been updated according to the source version effective from April 01, 2024.
- In the course of the update, 69 concepts were mapped to standard concepts in the Drug domain and de-standardized.
- ICD10PCS Hierarchy concepts that refer to the XW0 section, especially first-degree ancestors of drug administration procedures, demonstrate high variability of concept names. This behaviour depends both on the intrinsic vocabulary logic (X-codes are assigned to the new or experimental technologies and are refreshed often so that the same ancestor may have different descendants in each vocabulary release) and the UMLS logic of concept name compilation (names are assembled from distinct values of ICD10PCS source files with @ symbol as separators, and these values may vary). To avoid redundant variability and subsequent confusion we decided to replace the last variable part of XW0 hierarchical concepts that refer to drug administration procedures with a placeholder ‘@ Drug administration’.
- ICD10PCS - SNOMED hierarchy has been improved in its accuracy, 4340 erroneous ‘Is a’ relationships have been deprecated.
9. Read
- The mappings have been updated according to the new SNOMED version.
- The wrong domain assignments for some concepts have been fixed.
10. MedDRA
- MedDRA has been updated according to the source version 26.1, effective from September 2023.
- A total of 10,189 PT concepts and 2,874 LLTs have been mapped to concepts in standard vocabularies, primarily SNOMED. Currently, there are 15,161 PT and 11,255 LLT MedDRA concepts with mappings.
- A hierarchy between MedDRA and SNOMED / OMOPext has been established with 25,623 'Is a'/'Subsumes' links. In this hierarchy, different MedDRA concepts can be ancestors or descendants of SNOMED / OMOP Extension concepts, depending on the mappings of the concept. The model of the hierarchy is described here.
11. LOINC
- LOINC vocabulary has been updated with its 2.76 Sep 2023 version.
- The LOINC-SNOMED hierarchy was significantly expanded - more than 2300 ‘Is a’ relationships were added. Specifically, we've leveraged the outcomes of LOINC-SNOMED collaboration, particularly the LOINC Ontology, to enhance and refine the hierarchical relationships between SNOMED and LOINC Measurements.
- We also incorporated the SNOMED - LOINC deduplication mappings, provided by the Community.
12. CPT4, Co-connect, OMOP Invest drug, OPCS4, UK Biobank
- We have updated mappings for these vocabularies without changing vocabulary versions.
- Minor bug fixing: symbols such as [ZWSP] have been removed from the concept names in OPS vocabulary.
13. OMOP Extension
-
Added about two hundred codes related to different clinical areas including antibody measurements; scores and scales such as “Severity of alopecia tool”, “Hurley staging system”, “Itch Numeric Rating scale” etc.
-
We have added a set of standard concepts to support the ECLS CDM Expansion.
14. ICD Family
- In this release, ICD10, ICD10CM, ICD9CM, ICD10GM, ICD10CN, CIM10 and KCD7 vocabularies have been updated using the Vocabulary Common Data Environment (CDE).
CDE is a universal way of data organization, which helps improve the reuse of mappings among included vocabularies for a more homogeneous semantic environment. This data organization also makes it possible to simplify manual work and reduce the number of heterogeneous mappings of the same semantic units presented in different vocabularies.
СDE has been developed during the ICD family overhaul and will become the standard approach for the refresh of the connected vocabularies. - Previously mapping reuse logic was inconsistent across the different ICD family vocabularies. Reuse mapping logic has been improved, structured and harmonized for local ICD versions (ICD10GM, ICD10CN, CIM10, KCD7).
ICD10:
- Mappings have been updated following the SNOMED update.
- Mappings between ICD10 and ICD10CM have been harmonised and the mapping conflicts have been resolved.
ICD10CM:
- Has been updated to the latest version (FY2024), effective from April 01, 2024.
- Existing mappings have been updated following the SNOMED update.
- Mappings between ICD10 and ICD10CM have been harmonised and the mapping conflicts have been resolved.
ICD9CM:
- Existing mappings have been updated following the SNOMED update.
ICD10GM:
- The logic of mappings reuse from ICD10 has been adjusted.
- Existing mappings have been updated following the SNOMED update.
- 162 missing concepts with mappings and translations have been introduced.
ICD10CN:
- The logic of mappings reuse from ICD10 has been adjusted.
- Existing mappings have been updated following the SNOMED update.
KCD7:
- The logic of mappings reuse from ICD10 has been adjusted.
- Existing mappings have been updated following the SNOMED update.
CIM10:
- The logic of mappings reuse from ICD10 has been adjusted.
- Existing mappings have been updated following the SNOMED update.
- 30660 missing concepts with translations have been introduced.
15. MeSH
- The vocabulary has been updated according to the 2023AB version of the UMLS source.
16. OMOP Genomic
- OMOP Genomic variants still contain somatic mutations relative to cancer. The rules of collecting OMOP Genomic concepts have changed to improve the quality, coverage and sustainability:
- Variants of any kind at the logical gene level (without a sequence reference) now have the concept class “Gene Variant”, rather than “Genetic Variation”. The concept name has not changed.
- Gene fusions without modality and sequence location information also have the concept class “Gene Variant”. Concept names are now using the “::” delimiter between the gene symbols in line with HGNC recommendations. The 5′ or N-terminal partner gene is listed first in the description of a fusion gene.
- SNPs, Indels and other variants with precise sequence and location information (small variants) are now constructed via the usage of the ClinGen Allele Registry (via KOIOS), as opposed to constructed manually or imported directly from source data. All variants are now limited to one concept per variant, as opposed to one concept per variant version. Original concepts that indicated transcripts not present in MANE have been replaced by their MANE counterparts. Existing variants that cannot be mapped to MANE variants are deprecated. HGVS notations of small variants are now only in the CONCEPT_SYNONYM table.
- Deletions, derivatives, dicentrics, duplications, isochromosomes, insertions, inversions, translocations, monosomies, trisomies, tetrasomies, and loss of heterozygosity variants at the genomic level without logical gene reference (large variants) have the concept class “Structural Variant”. The concept name no longer contains the word “Karyotype”. They are collected by harvesting a number of public sources, such as Atlas, NCIt, SNOMED, LOINC, CiVIC and FDA labels.
- Small variants with precise mutation information and a genomic or chromosomal DNA location assigned to a gene have the concept class “Gene DNA Variant”. The concept name contains the coordinates as per GRCh38 reference genome and the chromosome number.
Genomic amplifications (copy numbers) and exon variants without genomic location information also have the concept class “Gene DNA Variant”. - Small variants at the genomic RNA (or cDNA) level now have the concept class “Gene RNA Variant”. There currently are no transcript expression based variants.
- Small variants (mutations) at the protein (amino acid) level have now the concept class “Gene Protein Variant”. One-letter abbreviations are now used in mutation descriptions in concept names.
- Expression changes, as well as nuclear and cytoplasmic expression changes, also have the concept class “Gene Protein Variant”.
The concept relationships “Is a”, “Subsumes”, “Transcribes to”, “Is transcribed from”, “Translates to” and “Is translated from” have not changed. Non-small variants (expression level and exon level changes) all have a “Is a” relationship to their respective “Gene Variant”. “Structural Variant” concepts have no relationships to other OMOP Genomic variants.
17. SUS
- The vocabulary is now distributed under the open-source license.
Domain changes
| vocabulary_id | old_domain_id | new_domain_id | count |
|---|---|---|---|
| CIM10 | Condition | Measurement | 39 |
| CIM10 | Condition | Observation | 509 |
| CIM10 | Condition | Procedure | 18 |
| CIM10 | Measurement | Condition | 1 |
| CIM10 | Observation | Condition | 5 |
| CIM10 | Observation | Procedure | 19 |
| CIM10 | Procedure | Observation | 1 |
| dm+d | Drug | Device | 7 |
| HCPCS | Condition | Observation | 105 |
| HCPCS | Device | Measurement | 5 |
| HCPCS | Device | Observation | 6 |
| HCPCS | Device | Procedure | 104 |
| HCPCS | Drug | Device | 3 |
| HCPCS | Drug | Observation | 8 |
| HCPCS | Drug | Procedure | 25 |
| HCPCS | Measurement | Observation | 1 |
| HCPCS | Observation | Device | 6 |
| HCPCS | Observation | Drug | 1 |
| HCPCS | Observation | Procedure | 7 |
| HCPCS | Procedure | Device | 18 |
| HCPCS | Procedure | Drug | 4 |
| HCPCS | Procedure | Measurement | 20 |
| HCPCS | Procedure | Observation | 100 |
| HCPCS | Provider | Observation | 81 |
| HCPCS | Visit | Observation | 256 |
| HCPCS | Visit | Procedure | 16 |
| ICD10 | Condition | Measurement | 38 |
| ICD10 | Condition | Observation | 976 |
| ICD10 | Condition | Procedure | 19 |
| ICD10 | Measurement | Condition | 1 |
| ICD10 | Observation | Condition | 7 |
| ICD10 | Observation | Procedure | 19 |
| ICD10 | Procedure | Observation | 1 |
| ICD10CM | Condition | Measurement | 97 |
| ICD10CM | Condition | Observation | 4206 |
| ICD10CM | Condition | Procedure | 41 |
| ICD10CM | Measurement | Condition | 15 |
| ICD10CM | Observation | Condition | 18 |
| ICD10CM | Observation | Measurement | 1 |
| ICD10CM | Observation | Procedure | 13 |
| ICD10CM | Procedure | Observation | 1 |
| ICD10CN | Condition | Measurement | 100 |
| ICD10CN | Condition | Observation | 1096 |
| ICD10CN | Condition | Procedure | 77 |
| ICD10CN | Measurement | Condition | 1 |
| ICD10CN | Observation | Condition | 32 |
| ICD10CN | Observation | Procedure | 25 |
| ICD10CN | Procedure | Observation | 2 |
| ICD10GM | Condition | Measurement | 37 |
| ICD10GM | Condition | Observation | 251 |
| ICD10GM | Condition | Procedure | 17 |
| ICD10GM | Measurement | Condition | 1 |
| ICD10GM | Observation | Condition | 3 |
| ICD10GM | Observation | Procedure | 20 |
| ICD10GM | Procedure | Observation | 1 |
| ICD10PCS | Procedure | Drug | 15 |
| ICD9CM | Condition | Measurement | 61 |
| ICD9CM | Condition | Observation | 509 |
| ICD9CM | Condition | Procedure | 42 |
| ICD9CM | Measurement | Procedure | 5 |
| ICD9CM | Observation | Condition | 225 |
| ICD9CM | Observation | Measurement | 1 |
| ICD9CM | Observation | Procedure | 12 |
| ICD9CM | Procedure | Measurement | 2 |
| ICD9CM | Procedure | Observation | 7 |
| KCD7 | Condition | Measurement | 43 |
| KCD7 | Condition | Observation | 1006 |
| KCD7 | Condition | Procedure | 19 |
| KCD7 | Measurement | Condition | 1 |
| KCD7 | Observation | Condition | 5 |
| KCD7 | Observation | Procedure | 19 |
| KCD7 | Procedure | Observation | 1 |
| MedDRA | Condition | Measurement | 1 |
| MedDRA | Condition | Observation | 1 |
| MedDRA | Condition | Procedure | 3 |
| MedDRA | Measurement | Procedure | 3 |
| MedDRA | Observation | Condition | 1 |
| MedDRA | Procedure | Condition | 3 |
| MeSH | Condition | Measurement | 1 |
| MeSH | Condition | Observation | 4 |
| MeSH | Condition | Spec Anatomic Site | 3 |
| MeSH | Device | Drug | 1 |
| MeSH | Drug | Observation | 6 |
| MeSH | Measurement | Condition | 6 |
| MeSH | Measurement | Procedure | 4 |
| MeSH | Observation | Condition | 3 |
| MeSH | Observation | Drug | 24 |
| MeSH | Procedure | Condition | 1 |
| MeSH | Procedure | Measurement | 1 |
| MeSH | Procedure | Observation | 1 |
| MeSH | Spec Anatomic Site | Condition | 1 |
| NDC | Device | Drug | 3 |
| NDC | Drug | Device | 55 |
| Read | Observation | Condition | 2 |
| Read | Observation | Measurement | 5 |
| Read | Observation | Procedure | 1 |
| Relationship | Metadata | Relationship | 14 |
| SNOMED | Condition | Drug | 3 |
| SNOMED | Condition | Gender | 5 |
| SNOMED | Condition | Measurement | 2912 |
| SNOMED | Condition | Observation | 29531 |
| SNOMED | Condition | Race | 1 |
| SNOMED | Device | Drug | 38 |
| SNOMED | Device | Observation | 201 |
| SNOMED | Drug | Device | 271 |
| SNOMED | Drug | Observation | 1060 |
| SNOMED | Gender | Observation | 5 |
| SNOMED | Measurement | Observation | 57 |
| SNOMED | Measurement | Procedure | 34 |
| SNOMED | Meas Value | Meas Value Operator | 2 |
| SNOMED | Meas Value | Observation | 31 |
| SNOMED | Metadata | Drug | 33 |
| SNOMED | Metadata | Measurement | 3 |
| SNOMED | Metadata | Observation | 48 |
| SNOMED | Metadata | Procedure | 4 |
| SNOMED | Metadata | Type Concept | 1 |
| SNOMED | Metadata | Unit | 1 |
| SNOMED | Observation | Condition | 101 |
| SNOMED | Observation | Device | 225 |
| SNOMED | Observation | Drug | 6194 |
| SNOMED | Observation | Geography | 629 |
| SNOMED | Observation | Language | 10 |
| SNOMED | Observation | Measurement | 3851 |
| SNOMED | Observation | Meas Value | 2995 |
| SNOMED | Observation | Metadata | 1 |
| SNOMED | Observation | Procedure | 737 |
| SNOMED | Observation | Provider | 113 |
| SNOMED | Observation | Race | 87 |
| SNOMED | Observation | Relationship | 192 |
| SNOMED | Observation | Route | 3 |
| SNOMED | Observation | Type Concept | 1 |
| SNOMED | Observation | Unit | 12 |
| SNOMED | Observation | Visit | 63 |
| SNOMED | Procedure | Measurement | 6491 |
| SNOMED | Procedure | Metadata | 1 |
| SNOMED | Procedure | Observation | 3255 |
| SNOMED | Provider | Observation | 11 |
| SNOMED | Relationship | Observation | 3 |
| SNOMED | Route | Observation | 1 |
| SNOMED | Spec Anatomic Site | Condition | 2 |
| SNOMED | Spec Anatomic Site | Drug | 2 |
| SNOMED | Spec Anatomic Site | Observation | 9 |
| SNOMED | Spec Disease Status | Meas Value | 3 |
| SNOMED | Type Concept | Observation | 1 |
| SNOMED | Unit | Meas Value | 1 |
| SNOMED | Visit | Observation | 436 |
| UK Biobank | Observation | Gender | 2 |
Newly added concepts grouped by Vocabulary_id and Domain
| vocabulary_id | domain_id | count |
|---|---|---|
| CIM10 | Condition | 3549 |
| CIM10 | Observation | 27110 |
| CIM10 | Procedure | 1 |
| CVX | Drug | 15 |
| HCPCS | Device | 138 |
| HCPCS | Drug | 59 |
| HCPCS | Observation | 175 |
| HCPCS | Procedure | 19 |
| ICD10 | Condition | 117 |
| ICD10 | Observation | 2 |
| ICD10CM | Condition | 453 |
| ICD10CM | Observation | 85 |
| ICD10CM | Procedure | 9 |
| ICD10GM | Condition | 157 |
| ICD10GM | Observation | 5 |
| ICD10PCS | Drug | 54 |
| ICD10PCS | Procedure | 1189 |
| LOINC | Measurement | 38 |
| LOINC | Meas Value | 1 |
| LOINC | Observation | 36 |
| MedDRA | Condition | 1521 |
| MedDRA | Measurement | 338 |
| MedDRA | Observation | 60 |
| MedDRA | Procedure | 582 |
| MeSH | Condition | 61 |
| MeSH | Device | 2 |
| MeSH | Drug | 29 |
| MeSH | Geography | 1 |
| MeSH | Measurement | 5 |
| MeSH | Observation | 1362 |
| MeSH | Procedure | 29 |
| MeSH | Spec Anatomic Site | 39 |
| NDC | Device | 134 |
| NDC | Drug | 23683 |
| OMOP Extension | Condition | 13 |
| OMOP Extension | Device | 21 |
| OMOP Extension | Measurement | 58 |
| OMOP Extension | Observation | 60 |
| OMOP Extension | Procedure | 18 |
| OMOP Extension | Specimen | 2 |
| OMOP Genomic | Measurement | 168898 |
| PPI | Observation | 269 |
| RxNorm | Drug | 2082 |
| SNOMED | Condition | 7844 |
| SNOMED | Device | 342 |
| SNOMED | Drug | 2921 |
| SNOMED | Geography | 54 |
| SNOMED | Language | 1 |
| SNOMED | Measurement | 4635 |
| SNOMED | Meas Value | 686 |
| SNOMED | Observation | 4266 |
| SNOMED | Procedure | 1758 |
| SNOMED | Provider | 39 |
| SNOMED | Race | 4 |
| SNOMED | Relationship | 16 |
| SNOMED | Route | 2 |
| SNOMED | Spec Anatomic Site | 1733 |
| SNOMED | Specimen | 49 |
| SNOMED | Type Concept | 53 |
| SNOMED | Unit | 4 |
| SPL | Device | 7 |
| SPL | Drug | 44676 |
| SPL | Observation | 1 |
| UCUM | Unit | 2 |
Standard concept changes
| vocabulary_id | old_standard_concept | new_standard_concept | count |
|---|---|---|---|
| CPT4 | Non-standard with mapping | Standard | 1 |
| dm+d | Non-standard with mapping | Standard | 186074 |
| HCPCS | Standard | Non-standard with mapping | 19 |
| HCPCS | Standard | Non-standard without mapping | 11 |
| HCPCS | Non-standard with mapping | Standard | 3 |
| ICD10PCS | Standard | Non-standard with mapping | 15 |
| LOINC | Standard | Non-standard with mapping | 35 |
| LOINC | Classification without mapping | Non-standard without mapping | 29 |
| LOINC | Standard | Non-standard without mapping | 1 |
| LOINC | Non-standard without mapping | Classification without mapping | 1 |
| MedDRA | Classification without mapping | Non-standard without mapping | 49718 |
| MedDRA | Classification with mapping | Non-standard without mapping | 44 |
| MedDRA | Classification with mapping | Non-standard with mapping | 2 |
| NDC | Non-standard with mapping | Standard | 55 |
| NDC | Standard | Non-standard with mapping | 29 |
| OMOP Extension | Standard | Non-standard with mapping | 17 |
| OMOP Genomic | Standard | Non-standard without mapping | 43507 |
| OMOP Genomic | Non-standard with mapping | Standard | 17 |
| PPI | Standard | Non-standard without mapping | 141 |
| PPI | Non-standard with mapping | Standard | 13 |
| RxNorm | Standard | Non-standard without mapping | 69 |
| RxNorm | Standard | Non-standard with mapping | 13 |
| RxNorm | Classification without mapping | Non-standard without mapping | 12 |
| RxNorm Extension | Standard | Non-standard with mapping | 84 |
| SNOMED | Standard | Non-standard with mapping | 203647 |
| SNOMED | Standard | Non-standard without mapping | 16822 |
| SNOMED | Non-standard without mapping | Standard | 784 |
| SNOMED | Non-standard with mapping | Standard | 50 |
| SPL | Classification without mapping | Non-standard without mapping | 22 |
| SPL | Classification with mapping | Non-standard with mapping | 8 |
| SPL | Classification without mapping | Non-standard with mapping | 1 |
| UK Biobank | Standard | Non-standard with mapping | 2 |
| UK Biobank | Standard | Non-standard without mapping | 1 |
Newly added concepts and their standard concept status
| vocabulary_id | new_standard_concept | count |
|---|---|---|
| CIM10 | Non-standard with mapping | 4216 |
| CIM10 | Non-standard without mapping | 26444 |
| Concept Class | Non-standard without mapping | 6 |
| CVX | Standard | 4 |
| CVX | Non-standard with mapping | 11 |
| HCPCS | Non-standard without mapping | 20 |
| HCPCS | Non-standard with mapping | 141 |
| HCPCS | Standard | 230 |
| ICD10 | Non-standard with mapping | 119 |
| ICD10CM | Non-standard with mapping | 547 |
| ICD10GM | Non-standard without mapping | 4 |
| ICD10GM | Non-standard with mapping | 158 |
| ICD10PCS | Non-standard with mapping | 54 |
| ICD10PCS | Standard | 1189 |
| LOINC | Standard | 3 |
| LOINC | Classification without mapping | 36 |
| LOINC | Non-standard without mapping | 36 |
| MedDRA | Classification without mapping | 2 |
| MedDRA | Classification with mapping | 47 |
| MedDRA | Non-standard without mapping | 2452 |
| MeSH | Non-standard with mapping | 36 |
| MeSH | Non-standard without mapping | 1492 |
| NDC | Standard | 134 |
| NDC | Non-standard without mapping | 8604 |
| NDC | Non-standard with mapping | 15079 |
| OMOP Extension | Standard | 172 |
| OMOP Genomic | Standard | 168898 |
| PPI | Standard | 269 |
| Relationship | Non-standard without mapping | 6 |
| RxNorm | Non-standard with mapping | 91 |
| RxNorm | Non-standard without mapping | 107 |
| RxNorm | Classification without mapping | 247 |
| RxNorm | Standard | 1637 |
| SNOMED | Non-standard with mapping | 912 |
| SNOMED | Non-standard without mapping | 3225 |
| SNOMED | Standard | 20331 |
| SPL | Non-standard without mapping | 2 |
| SPL | Classification without mapping | 44682 |
| UCUM | Standard | 2 |
Changes of concept mapping status grouped by target domain
| vocabulary_id | Old target Domain/Status | New target Domain/Status | count |
|---|---|---|---|
| AMT | Drug | No mapping | 3 |
| ATC | Drug | No mapping | 2 |
| CAP | Condition | Measurement | 60 |
| CAP | Condition | Meas Value | 48 |
| CAP | Condition | No mapping | 8 |
| CAP | Condition | Observation | 28 |
| CAP | Condition | Procedure | 4 |
| CAP | Measurement | No mapping | 4 |
| CAP | Meas Value | No mapping | 18 |
| CAP | No mapping | Observation | 6 |
| CAP | Observation | Measurement | 13 |
| CAP | Observation | Meas Value | 38 |
| CAP | Observation | No mapping | 5 |
| CAP | Spec Disease Status | Meas Value | 3 |
| CGI | Measurement | No mapping | 85 |
| CIEL | Condition | Measurement | 155 |
| CIEL | Condition | Meas Value | 29 |
| CIEL | Condition | No mapping | 663 |
| CIEL | Condition | Observation | 1251 |
| CIEL | Condition | Procedure | 57 |
| CIEL | Condition | Spec Anatomic Site | 1 |
| CIEL | Condition/Drug/Observation | Condition/Drug | 2 |
| CIEL | Device | No mapping | 1 |
| CIEL | Device/Drug | Drug | 98 |
| CIEL | Drug/Observation | Drug | 317 |
| CIEL | Measurement | No mapping | 8 |
| CIEL | Measurement | Observation | 15 |
| CIEL | Meas Value | No mapping | 6 |
| CIEL | Observation | Condition | 5 |
| CIEL | Observation | Geography | 5 |
| CIEL | Observation | Measurement | 22 |
| CIEL | Observation | Meas Value | 154 |
| CIEL | Observation | No mapping | 224 |
| CIEL | Observation | Procedure | 5 |
| CIEL | Observation | Spec Anatomic Site | 4 |
| CIEL | Procedure | Measurement | 7 |
| CIEL | Procedure | No mapping | 3 |
| CIEL | Procedure | Observation | 26 |
| CIEL | Relationship | No mapping | 26 |
| CIEL | Spec Anatomic Site | Observation | 1 |
| CIEL | Spec Disease Status | Meas Value | 2 |
| CIM10 | Condition | Condition/Measurement | 4 |
| CIM10 | Condition | Condition/Observation | 31 |
| CIM10 | Condition | Measurement | 48 |
| CIM10 | Condition | Measurement/Observation | 1 |
| CIM10 | Condition | Measurement/Procedure | 1 |
| CIM10 | Condition | Observation | 274 |
| CIM10 | Condition | Procedure | 17 |
| CIM10 | Condition/Measurement | Measurement | 17 |
| CIM10 | Condition/Observation | Observation | 234 |
| CIM10 | Measurement | Condition/Measurement | 1 |
| CIM10 | New concept | Condition | 3544 |
| CIM10 | New concept | Condition/Observation | 4 |
| CIM10 | New concept | Observation | 667 |
| CIM10 | New concept | Procedure | 1 |
| CIM10 | No mapping | Observation | 2 |
| CIM10 | Observation | Condition | 4 |
| CIM10 | Observation | Condition/Observation | 1 |
| CIM10 | Observation | Observation/Procedure | 2 |
| CIM10 | Observation | Procedure | 19 |
| CIM10 | Procedure | Observation | 1 |
| CIViC | Measurement | No mapping | 149 |
| ClinVar | Measurement | No mapping | 81 |
| CO-CONNECT | Condition | Observation | 3 |
| CO-CONNECT TWINS | Condition | Observation | 3 |
| CO-CONNECT TWINS | Observation | Condition | 2 |
| CO-CONNECT TWINS | Observation | Measurement | 16 |
| CO-CONNECT TWINS | Observation | No mapping | 4 |
| CPT4 | Condition | Observation | 1 |
| CPT4 | Measurement | Observation/Procedure | 1 |
| CPT4 | Measurement | Procedure | 1 |
| CPT4 | Observation | Procedure | 5 |
| CPT4 | Procedure | Measurement | 15 |
| CPT4 | Procedure | No mapping | 1 |
| CPT4 | Procedure | Observation | 3 |
| CPT4 | Procedure/Visit | Visit | 3 |
| CTD | Drug | No mapping | 2 |
| CVX | New concept | Drug | 15 |
| DA_France | Drug | No mapping | 7 |
| dm+d | Device | No mapping | 4 |
| dm+d | Drug | No mapping | 9 |
| EDI | Condition | Meas Value | 1 |
| EDI | Condition | Observation | 3 |
| EDI | Measurement | Meas Value | 1 |
| EDI | Observation | Meas Value | 7 |
| Gemscript | Device | No mapping | 8 |
| Gemscript | Drug | No mapping | 10 |
| GRR | Drug | No mapping | 2 |
| HCPCS | Condition | Measurement | 1 |
| HCPCS | Condition | Observation | 2 |
| HCPCS | Condition | Procedure | 1 |
| HCPCS | Device | Drug | 1 |
| HCPCS | Device | Observation | 3 |
| HCPCS | Device | Procedure | 1 |
| HCPCS | Drug | Device | 2 |
| HCPCS | Drug | Observation | 1 |
| HCPCS | Drug | Procedure | 22 |
| HCPCS | Measurement | Procedure | 3 |
| HCPCS | Measurement/Procedure | Procedure | 1 |
| HCPCS | New concept | Condition | 7 |
| HCPCS | New concept | Condition/Procedure | 1 |
| HCPCS | New concept | Device | 138 |
| HCPCS | New concept | Drug | 59 |
| HCPCS | New concept | Measurement | 12 |
| HCPCS | New concept | Observation | 128 |
| HCPCS | New concept | Observation/Procedure | 1 |
| HCPCS | New concept | Procedure | 22 |
| HCPCS | New concept | Visit | 3 |
| HCPCS | No mapping | Measurement | 3 |
| HCPCS | No mapping | Procedure | 3 |
| HCPCS | Observation | Condition | 3 |
| HCPCS | Observation | Condition/Observation | 2 |
| HCPCS | Observation | Condition/Procedure | 1 |
| HCPCS | Observation | Device | 5 |
| HCPCS | Observation | No mapping | 11 |
| HCPCS | Observation | Procedure | 6 |
| HCPCS | Observation/Visit | Procedure/Visit | 4 |
| HCPCS | Procedure | Condition/Procedure | 1 |
| HCPCS | Procedure | Device | 16 |
| HCPCS | Procedure | Drug/Procedure | 1 |
| HCPCS | Procedure | Measurement | 12 |
| HCPCS | Procedure | Observation | 30 |
| HCPCS | Procedure/Provider/Visit | Provider/Visit | 1 |
| HCPCS | Procedure/Visit | Condition/Procedure/Visit | 1 |
| HCPCS | Procedure/Visit | Observation/Visit | 1 |
| HemOnc | Condition | No mapping | 1 |
| HemOnc | Condition/Measurement | Condition | 1 |
| HemOnc | Drug | No mapping | 6 |
| ICD10 | Condition | Condition/Measurement | 4 |
| ICD10 | Condition | Condition/Observation | 19 |
| ICD10 | Condition | Measurement | 48 |
| ICD10 | Condition | Measurement/Observation | 1 |
| ICD10 | Condition | Measurement/Procedure | 1 |
| ICD10 | Condition | Observation | 263 |
| ICD10 | Condition | Procedure | 18 |
| ICD10 | Condition/Measurement | Measurement | 17 |
| ICD10 | Condition/Observation | Observation | 716 |
| ICD10 | Measurement | Condition/Measurement | 1 |
| ICD10 | New concept | Condition | 117 |
| ICD10 | New concept | Observation | 2 |
| ICD10 | No mapping | Observation | 2 |
| ICD10 | Observation | Condition | 4 |
| ICD10 | Observation | Condition/Observation | 1 |
| ICD10 | Observation | Observation/Procedure | 1 |
| ICD10 | Observation | Procedure | 19 |
| ICD10 | Procedure | Observation | 1 |
| ICD10CM | Condition | Condition/Measurement | 11 |
| ICD10CM | Condition | Condition/Observation | 576 |
| ICD10CM | Condition | Measurement | 105 |
| ICD10CM | Condition | Measurement/Observation | 1 |
| ICD10CM | Condition | Measurement/Procedure | 1 |
| ICD10CM | Condition | Observation | 1271 |
| ICD10CM | Condition | Procedure | 40 |
| ICD10CM | Condition/Measurement | Measurement | 31 |
| ICD10CM | Condition/Observation | Condition | 16 |
| ICD10CM | Condition/Observation | Condition/Meas Value | 7 |
| ICD10CM | Condition/Observation | Meas Value/Observation | 1 |
| ICD10CM | Condition/Observation | Observation | 3132 |
| ICD10CM | Drug/Observation | Observation | 1 |
| ICD10CM | Measurement | Condition/Measurement | 1 |
| ICD10CM | New concept | Condition | 450 |
| ICD10CM | New concept | Condition/Observation | 3 |
| ICD10CM | New concept | Observation | 85 |
| ICD10CM | New concept | Procedure | 9 |
| ICD10CM | No mapping | Condition | 3 |
| ICD10CM | No mapping | Condition/Observation | 1 |
| ICD10CM | No mapping | Observation | 3 |
| ICD10CM | Observation | Condition | 11 |
| ICD10CM | Observation | Measurement | 94 |
| ICD10CM | Observation | No mapping | 248 |
| ICD10CM | Observation | Observation/Procedure | 2 |
| ICD10CM | Observation | Procedure | 13 |
| ICD10CM | Procedure | Observation | 1 |
| ICD10CN | Condition | Condition/Measurement | 46 |
| ICD10CN | Condition | Condition/Observation | 54 |
| ICD10CN | Condition | Measurement | 190 |
| ICD10CN | Condition | Measurement/Observation | 2 |
| ICD10CN | Condition | Measurement/Procedure | 2 |
| ICD10CN | Condition | Observation | 565 |
| ICD10CN | Condition | Procedure | 75 |
| ICD10CN | Condition/Measurement | Measurement | 64 |
| ICD10CN | Condition/Observation | Observation | 530 |
| ICD10CN | Measurement | Condition/Measurement | 1 |
| ICD10CN | Measurement | Measurement/Meas Value | 1 |
| ICD10CN | No mapping | Observation | 4 |
| ICD10CN | Observation | Condition | 5 |
| ICD10CN | Observation | Condition/Observation | 2 |
| ICD10CN | Observation | Observation/Procedure | 3 |
| ICD10CN | Observation | Procedure | 25 |
| ICD10CN | Observation/Procedure | Observation | 6 |
| ICD10CN | Procedure | Observation | 2 |
| ICD10GM | Condition | Condition/Measurement | 4 |
| ICD10GM | Condition | Condition/Observation | 19 |
| ICD10GM | Condition | Measurement | 47 |
| ICD10GM | Condition | Measurement/Observation | 1 |
| ICD10GM | Condition | Measurement/Procedure | 1 |
| ICD10GM | Condition | Observation | 256 |
| ICD10GM | Condition | Procedure | 18 |
| ICD10GM | Condition/Measurement | Measurement | 17 |
| ICD10GM | Measurement | Condition/Measurement | 1 |
| ICD10GM | New concept | Condition | 152 |
| ICD10GM | New concept | Condition/Observation | 5 |
| ICD10GM | New concept | Observation | 1 |
| ICD10GM | No mapping | Observation | 1 |
| ICD10GM | Observation | Condition | 3 |
| ICD10GM | Observation | Observation/Procedure | 2 |
| ICD10GM | Observation | Procedure | 20 |
| ICD10GM | Procedure | Observation | 1 |
| ICD10PCS | New concept | Drug | 50 |
| ICD10PCS | New concept | Drug/Procedure | 4 |
| ICD10PCS | New concept | Procedure | 1189 |
| ICD10PCS | Procedure | Drug | 15 |
| ICD9CM | Condition | Condition/Measurement | 173 |
| ICD9CM | Condition | Condition/Observation | 310 |
| ICD9CM | Condition | Condition/Procedure | 16 |
| ICD9CM | Condition | Measurement | 52 |
| ICD9CM | Condition | Observation | 421 |
| ICD9CM | Condition | Procedure | 42 |
| ICD9CM | Condition/Measurement | Measurement | 9 |
| ICD9CM | Condition/Observation | Condition | 4 |
| ICD9CM | Condition/Observation | Observation | 94 |
| ICD9CM | Measurement | Procedure | 5 |
| ICD9CM | No mapping | Observation | 1 |
| ICD9CM | Observation | Condition | 1 |
| ICD9CM | Observation | Condition/Observation | 224 |
| ICD9CM | Observation | Measurement | 1 |
| ICD9CM | Observation | Procedure | 12 |
| ICD9CM | Procedure | Measurement | 2 |
| ICD9CM | Procedure | Observation | 7 |
| ICD9Proc | No mapping | Procedure | 8 |
| ICD9Proc | Observation | Procedure | 14 |
| ICD9Proc | Procedure | Measurement | 5 |
| ICD9Proc | Procedure | No mapping | 25 |
| ICD9Proc | Procedure | Observation | 6 |
| ICD9ProcCN | Drug/Observation | Drug/Procedure | 1 |
| ICD9ProcCN | Observation | Procedure | 36 |
| ICD9ProcCN | Procedure | Measurement | 12 |
| ICD9ProcCN | Procedure | No mapping | 74 |
| ICD9ProcCN | Procedure | Observation | 14 |
| ICDO3 | Condition | No mapping | 4 |
| ICDO3 | Observation | No mapping | 5 |
| JAX | Measurement | No mapping | 2497 |
| KCD7 | Condition | Condition/Measurement | 4 |
| KCD7 | Condition | Condition/Observation | 20 |
| KCD7 | Condition | Measurement | 48 |
| KCD7 | Condition | Measurement/Observation | 1 |
| KCD7 | Condition | Measurement/Procedure | 1 |
| KCD7 | Condition | Observation | 262 |
| KCD7 | Condition | Procedure | 18 |
| KCD7 | Condition/Measurement | Measurement | 21 |
| KCD7 | Condition/Observation | Observation | 716 |
| KCD7 | Measurement | Condition/Measurement | 1 |
| KCD7 | No mapping | Condition | 86 |
| KCD7 | No mapping | Observation | 4 |
| KCD7 | Observation | Condition | 4 |
| KCD7 | Observation | Condition/Observation | 1 |
| KCD7 | Observation | Observation/Procedure | 2 |
| KCD7 | Observation | Procedure | 19 |
| KCD7 | Procedure | Observation | 1 |
| KDC | Drug | No mapping | 1 |
| LOINC | Measurement | Meas Value | 2 |
| LOINC | Meas Value | No mapping | 1 |
| LOINC | New concept | Measurement | 2 |
| LOINC | New concept | Meas Value | 1 |
| LPD_Australia | Drug | No mapping | 5 |
| LPD_Belgium | Drug | No mapping | 1 |
| MedDRA | Condition | Condition/Measurement | 4 |
| MedDRA | Condition | Condition/Observation | 18 |
| MedDRA | Condition | Condition/Procedure | 1 |
| MedDRA | Condition | Measurement | 92 |
| MedDRA | Condition | Measurement/Observation | 1 |
| MedDRA | Condition | No mapping | 33 |
| MedDRA | Condition | Observation | 834 |
| MedDRA | Condition | Observation/Procedure | 1 |
| MedDRA | Condition | Procedure | 26 |
| MedDRA | Condition/Episode | Condition | 7 |
| MedDRA | Condition/Measurement | Observation | 1 |
| MedDRA | Condition/Observation | Condition | 26 |
| MedDRA | Condition/Observation | Condition/Measurement | 1 |
| MedDRA | Condition/Observation | Observation | 7 |
| MedDRA | Condition/Procedure | Condition | 3 |
| MedDRA | Condition/Procedure | Measurement | 1 |
| MedDRA | Condition/Procedure | Observation | 2 |
| MedDRA | Condition/Procedure | Procedure | 12 |
| MedDRA | Measurement | Condition | 9 |
| MedDRA | Measurement | No mapping | 18 |
| MedDRA | Measurement | Observation | 28 |
| MedDRA | Measurement | Procedure | 2 |
| MedDRA | Measurement/Meas Value | Measurement | 1 |
| MedDRA | New concept | Condition | 40 |
| MedDRA | New concept | Condition/Observation | 2 |
| MedDRA | New concept | Measurement | 1 |
| MedDRA | New concept | Observation | 4 |
| MedDRA | No mapping | Condition | 5965 |
| MedDRA | No mapping | Condition/Measurement | 6 |
| MedDRA | No mapping | Condition/Observation | 5 |
| MedDRA | No mapping | Condition/Procedure | 2 |
| MedDRA | No mapping | Drug | 2 |
| MedDRA | No mapping | Measurement | 5326 |
| MedDRA | No mapping | Meas Value | 1 |
| MedDRA | No mapping | Meas Value/Procedure | 1 |
| MedDRA | No mapping | Observation | 664 |
| MedDRA | No mapping | Procedure | 1111 |
| MedDRA | No mapping | Relationship | 2 |
| MedDRA | No mapping | Spec Anatomic Site | 1 |
| MedDRA | Observation | Condition | 41 |
| MedDRA | Observation | Condition/Observation | 1 |
| MedDRA | Observation | Measurement | 16 |
| MedDRA | Observation | No mapping | 9 |
| MedDRA | Observation | Observation/Procedure | 1 |
| MedDRA | Observation | Procedure | 9 |
| MedDRA | Observation/Procedure | Observation | 2 |
| MedDRA | Observation/Procedure | Procedure | 1 |
| MedDRA | Procedure | Condition | 2 |
| MedDRA | Procedure | Condition/Procedure | 1 |
| MedDRA | Procedure | Drug | 12 |
| MedDRA | Procedure | Measurement | 4 |
| MedDRA | Procedure | No mapping | 4 |
| MedDRA | Procedure | Observation | 1 |
| MeSH | Condition | Measurement | 9 |
| MeSH | Condition | No mapping | 20 |
| MeSH | Condition | Observation | 343 |
| MeSH | Drug/Observation | Drug | 2 |
| MeSH | Measurement | Condition | 1 |
| MeSH | Measurement | No mapping | 12 |
| MeSH | Measurement | Observation | 1 |
| MeSH | New concept | Condition | 19 |
| MeSH | New concept | Drug | 10 |
| MeSH | New concept | Measurement | 2 |
| MeSH | New concept | Observation | 1 |
| MeSH | New concept | Procedure | 4 |
| MeSH | No mapping | Condition | 8 |
| MeSH | No mapping | Drug | 24 |
| MeSH | No mapping | Observation | 1 |
| MeSH | No mapping | Procedure | 1 |
| MeSH | Observation | Condition | 2 |
| MeSH | Observation | Measurement | 2 |
| MeSH | Observation | No mapping | 15 |
| MeSH | Observation | Procedure | 12 |
| MeSH | Procedure | Measurement | 18 |
| MeSH | Procedure | No mapping | 2 |
| MeSH | Procedure | Observation | 11 |
| MeSH | Relationship | No mapping | 1 |
| NCCD | Drug | No mapping | 10 |
| NCIt | Measurement | No mapping | 389 |
| NDC | Device | Drug | 29 |
| NDC | Drug | Device | 55 |
| NDC | Drug | No mapping | 17 |
| NDC | New concept | Device | 134 |
| NDC | New concept | Drug | 15079 |
| NDC | No mapping | Drug | 3198 |
| Nebraska Lexicon | Condition | Condition/Observation | 8 |
| Nebraska Lexicon | Condition | Condition/Procedure | 1 |
| Nebraska Lexicon | Condition | Measurement | 3531 |
| Nebraska Lexicon | Condition | Measurement/Meas Value | 3 |
| Nebraska Lexicon | Condition | Measurement/Procedure | 1 |
| Nebraska Lexicon | Condition | Meas Value | 1009 |
| Nebraska Lexicon | Condition | No mapping | 2425 |
| Nebraska Lexicon | Condition | Observation | 15706 |
| Nebraska Lexicon | Condition | Procedure | 633 |
| Nebraska Lexicon | Condition | Spec Anatomic Site | 1 |
| Nebraska Lexicon | Condition/Measurement | Measurement | 2 |
| Nebraska Lexicon | Condition/Observation | Measurement/Observation | 2 |
| Nebraska Lexicon | Condition/Observation | Observation | 6 |
| Nebraska Lexicon | Device | Device/Drug | 56 |
| Nebraska Lexicon | Device | Drug | 118 |
| Nebraska Lexicon | Device | Drug/Observation | 4 |
| Nebraska Lexicon | Device | No mapping | 257 |
| Nebraska Lexicon | Device | Observation | 17 |
| Nebraska Lexicon | Device/Drug | Drug | 54 |
| Nebraska Lexicon | Drug/Observation | Drug | 129 |
| Nebraska Lexicon | Measurement | Measurement/Observation | 1 |
| Nebraska Lexicon | Measurement | Meas Value | 74 |
| Nebraska Lexicon | Measurement | No mapping | 133 |
| Nebraska Lexicon | Measurement | Observation | 58 |
| Nebraska Lexicon | Measurement | Procedure | 43 |
| Nebraska Lexicon | Meas Value | Meas Value Operator | 2 |
| Nebraska Lexicon | Meas Value | No mapping | 765 |
| Nebraska Lexicon | Meas Value | Observation | 34 |
| Nebraska Lexicon | Observation | Condition | 63 |
| Nebraska Lexicon | Observation | Device | 83 |
| Nebraska Lexicon | Observation | Device/Drug | 12 |
| Nebraska Lexicon | Observation | Drug | 320 |
| Nebraska Lexicon | Observation | Drug/Observation | 103 |
| Nebraska Lexicon | Observation | Geography | 227 |
| Nebraska Lexicon | Observation | Measurement | 1373 |
| Nebraska Lexicon | Observation | Meas Value | 2937 |
| Nebraska Lexicon | Observation | Meas Value/Observation | 1 |
| Nebraska Lexicon | Observation | No mapping | 10722 |
| Nebraska Lexicon | Observation | Procedure | 677 |
| Nebraska Lexicon | Observation | Relationship | 9 |
| Nebraska Lexicon | Observation | Spec Anatomic Site | 98 |
| Nebraska Lexicon | Observation/Procedure | Procedure | 3 |
| Nebraska Lexicon | Observation/Route | Observation | 2 |
| Nebraska Lexicon | Observation/Specimen | Specimen | 1 |
| Nebraska Lexicon | Procedure | Condition | 4 |
| Nebraska Lexicon | Procedure | Device | 4 |
| Nebraska Lexicon | Procedure | Measurement | 1153 |
| Nebraska Lexicon | Procedure | Measurement/Procedure | 2 |
| Nebraska Lexicon | Procedure | No mapping | 617 |
| Nebraska Lexicon | Procedure | Observation | 1315 |
| Nebraska Lexicon | Relationship | No mapping | 371 |
| Nebraska Lexicon | Route | No mapping | 164 |
| Nebraska Lexicon | Spec Anatomic Site | Condition | 1 |
| Nebraska Lexicon | Spec Anatomic Site | No mapping | 159 |
| Nebraska Lexicon | Spec Anatomic Site | Observation | 7 |
| Nebraska Lexicon | Spec Disease Status | Meas Value | 3 |
| OMOP Extension | Condition | Observation | 1 |
| OMOP Extension | New concept | Condition | 13 |
| OMOP Extension | New concept | Device | 21 |
| OMOP Extension | New concept | Measurement | 58 |
| OMOP Extension | New concept | Observation | 60 |
| OMOP Extension | New concept | Procedure | 18 |
| OMOP Extension | New concept | Specimen | 2 |
| OMOP Genomic | Measurement | No mapping | 43537 |
| OMOP Genomic | New concept | Measurement | 168898 |
| OncoKB | Measurement | No mapping | 4708 |
| OncoTree | Condition | No mapping | 1 |
| OncoTree | Condition | Observation | 2 |
| OncoTree | No mapping | Condition | 2 |
| OPCS4 | Condition | Observation | 5 |
| OPCS4 | Measurement | Observation | 4 |
| OPCS4 | No mapping | Drug | 1 |
| OPCS4 | No mapping | Procedure | 12 |
| OPCS4 | No mapping | Spec Anatomic Site | 2 |
| OPCS4 | Observation | Measurement | 1 |
| OPCS4 | Observation | Meas Value | 1 |
| OPCS4 | Observation | No mapping | 10 |
| OPCS4 | Observation | Procedure | 2 |
| OPCS4 | Procedure | Drug | 7 |
| OPCS4 | Procedure | Drug/Procedure | 2 |
| OPCS4 | Procedure | Measurement | 32 |
| OPCS4 | Procedure | No mapping | 2 |
| OPCS4 | Procedure | Observation | 6 |
| OPS | No mapping | Procedure | 4 |
| OPS | Observation | Procedure | 3 |
| OPS | Procedure | Drug | 3 |
| OPS | Procedure | Measurement | 7 |
| OPS | Procedure | Observation | 3 |
| OXMIS | Condition | Measurement | 167 |
| OXMIS | Condition | No mapping | 32 |
| OXMIS | Condition | Observation | 416 |
| OXMIS | Condition | Procedure | 47 |
| OXMIS | Condition/Measurement | Measurement | 1 |
| OXMIS | Condition/Observation | Condition | 1 |
| OXMIS | Condition/Observation | Condition/Measurement | 1 |
| OXMIS | Condition/Observation | Condition/Meas Value | 1 |
| OXMIS | Condition/Observation | Measurement/Observation | 1 |
| OXMIS | Condition/Observation | Observation | 10 |
| OXMIS | Condition/Procedure | Observation/Procedure | 1 |
| OXMIS | Measurement | No mapping | 1 |
| OXMIS | Measurement | Observation | 2 |
| OXMIS | Observation | Condition | 2 |
| OXMIS | Observation | Measurement | 2 |
| OXMIS | Observation | Meas Value | 17 |
| OXMIS | Observation | Meas Value/Observation | 1 |
| OXMIS | Observation | No mapping | 39 |
| OXMIS | Observation | Procedure | 5 |
| OXMIS | Observation | Spec Anatomic Site | 1 |
| OXMIS | Procedure | Measurement | 6 |
| OXMIS | Procedure | No mapping | 4 |
| OXMIS | Procedure | Observation | 8 |
| OXMIS | Relationship | No mapping | 8 |
| PPI | Condition | Observation | 6 |
| PPI | Measurement | No mapping | 3 |
| PPI | Meas Value | No mapping | 50 |
| PPI | New concept | Observation | 269 |
| PPI | No mapping | Observation | 2 |
| PPI | Observation | Condition/Observation | 1 |
| PPI | Observation | Meas Value | 2 |
| PPI | Observation | No mapping | 179 |
| Read | Condition | Condition/Measurement | 6 |
| Read | Condition | Condition/Observation | 19 |
| Read | Condition | Condition/Procedure | 1 |
| Read | Condition | Measurement | 1247 |
| Read | Condition | Measurement/Observation | 4 |
| Read | Condition | Measurement/Procedure | 1 |
| Read | Condition | Meas Value | 1 |
| Read | Condition | No mapping | 199 |
| Read | Condition | Observation | 4349 |
| Read | Condition | Procedure | 368 |
| Read | Condition/Measurement | Measurement | 3 |
| Read | Condition/Observation | Observation | 10 |
| Read | Condition/Procedure | Observation/Procedure | 2 |
| Read | Condition/Type Concept | Observation | 1 |
| Read | Condition/Type Concept | Observation/Type Concept | 22 |
| Read | Device | Procedure | 1 |
| Read | Drug | No mapping | 3 |
| Read | Drug/Observation | Drug | 1 |
| Read | Drug/Observation | Drug/Procedure | 9 |
| Read | Drug/Procedure | Drug | 25 |
| Read | Drug/Procedure | No mapping | 3 |
| Read | Drug/Procedure | Procedure | 32 |
| Read | Measurement | Condition | 1 |
| Read | Measurement | Measurement/Observation | 1 |
| Read | Measurement | Meas Value | 1 |
| Read | Measurement | No mapping | 16 |
| Read | Measurement | Observation | 20 |
| Read | Measurement | Procedure | 17 |
| Read | Meas Value | Observation | 11 |
| Read | No mapping | Condition | 55 |
| Read | No mapping | Condition/Procedure | 1 |
| Read | No mapping | Drug | 1 |
| Read | No mapping | Measurement | 71 |
| Read | No mapping | Measurement/Observation | 1 |
| Read | No mapping | Observation | 350 |
| Read | No mapping | Observation/Procedure | 12 |
| Read | No mapping | Procedure | 260 |
| Read | No mapping | Spec Anatomic Site | 1 |
| Read | No mapping | Visit | 14 |
| Read | Observation | Condition | 29 |
| Read | Observation | Condition/Observation | 1 |
| Read | Observation | Device | 3 |
| Read | Observation | Measurement | 300 |
| Read | Observation | Meas Value | 17 |
| Read | Observation | No mapping | 665 |
| Read | Observation | Procedure | 508 |
| Read | Observation | Procedure/Specimen | 1 |
| Read | Observation | Relationship | 1 |
| Read | Observation | Specimen | 1 |
| Read | Observation | Visit | 1 |
| Read | Observation/Procedure | Measurement/Observation | 2 |
| Read | Observation/Procedure | Observation | 3 |
| Read | Observation/Procedure | Procedure | 1 |
| Read | Procedure | Device | 1 |
| Read | Procedure | Drug | 4 |
| Read | Procedure | Measurement | 152 |
| Read | Procedure | No mapping | 55 |
| Read | Procedure | Observation | 475 |
| Read | Procedure | Observation/Procedure | 2 |
| Read | Relationship | No mapping | 64 |
| Read | Relationship | Observation | 2 |
| Read | Spec Anatomic Site | Observation | 2 |
| Relationship | Metadata | Relationship | 14 |
| RxNorm | Drug | No mapping | 92 |
| RxNorm | New concept | Drug | 1728 |
| RxNorm Extension | Drug | No mapping | 6 |
| SNOMED | Condition | Condition/Measurement | 140 |
| SNOMED | Condition | Condition/Observation | 33 |
| SNOMED | Condition | Condition/Procedure | 15 |
| SNOMED | Condition | Gender | 4 |
| SNOMED | Condition | Measurement | 5220 |
| SNOMED | Condition | Measurement/Meas Value | 4 |
| SNOMED | Condition | Measurement/Procedure | 3 |
| SNOMED | Condition | Meas Value | 1008 |
| SNOMED | Condition | No mapping | 3117 |
| SNOMED | Condition | Observation | 19933 |
| SNOMED | Condition | Observation/Procedure | 5 |
| SNOMED | Condition | Procedure | 779 |
| SNOMED | Condition | Spec Anatomic Site | 3 |
| SNOMED | Condition/Gender | Gender | 1 |
| SNOMED | Condition/Measurement | Measurement | 35 |
| SNOMED | Device | Device/Drug | 4 |
| SNOMED | Device | Drug | 332 |
| SNOMED | Device | No mapping | 2531 |
| SNOMED | Device | Observation | 27 |
| SNOMED | Device | Procedure | 7 |
| SNOMED | Device/Drug | Device | 3 |
| SNOMED | Device/Drug | Drug | 77 |
| SNOMED | Device/Drug | No mapping | 10 |
| SNOMED | Drug | Device | 4 |
| SNOMED | Drug | Device/Drug | 1 |
| SNOMED | Drug | Drug/Observation | 2 |
| SNOMED | Drug | Drug/Procedure | 160 |
| SNOMED | Drug | Measurement | 2 |
| SNOMED | Drug | No mapping | 253 |
| SNOMED | Drug | Observation | 1 |
| SNOMED | Drug | Procedure | 1 |
| SNOMED | Drug/Observation | Drug | 245 |
| SNOMED | Drug/Observation | No mapping | 50 |
| SNOMED | Drug/Procedure | Drug | 11 |
| SNOMED | Measurement | Measurement/Observation | 4 |
| SNOMED | Measurement | Meas Value | 76 |
| SNOMED | Measurement | No mapping | 79 |
| SNOMED | Measurement | Observation | 87 |
| SNOMED | Measurement | Procedure | 53 |
| SNOMED | Meas Value | Meas Value Operator | 3 |
| SNOMED | Meas Value | No mapping | 838 |
| SNOMED | Meas Value | Observation | 44 |
| SNOMED | New concept | Condition | 7558 |
| SNOMED | New concept | Condition/Measurement | 55 |
| SNOMED | New concept | Device | 341 |
| SNOMED | New concept | Drug | 55 |
| SNOMED | New concept | Geography | 8 |
| SNOMED | New concept | Language | 1 |
| SNOMED | New concept | Measurement | 4868 |
| SNOMED | New concept | Meas Value | 686 |
| SNOMED | New concept | Observation | 4137 |
| SNOMED | New concept | Procedure | 1738 |
| SNOMED | New concept | Relationship | 16 |
| SNOMED | New concept | Route | 2 |
| SNOMED | New concept | Spec Anatomic Site | 1729 |
| SNOMED | New concept | Specimen | 49 |
| SNOMED | No mapping | Condition | 5291 |
| SNOMED | No mapping | Condition/Observation | 3 |
| SNOMED | No mapping | Device | 18660 |
| SNOMED | No mapping | Device/Drug | 2 |
| SNOMED | No mapping | Drug | 152724 |
| SNOMED | No mapping | Drug/Procedure | 1 |
| SNOMED | No mapping | Ethnicity | 2 |
| SNOMED | No mapping | Ethnicity/Race | 2 |
| SNOMED | No mapping | Language | 1 |
| SNOMED | No mapping | Measurement | 293 |
| SNOMED | No mapping | Measurement/Procedure | 1 |
| SNOMED | No mapping | Meas Value | 4 |
| SNOMED | No mapping | Observation | 6978 |
| SNOMED | No mapping | Procedure | 757 |
| SNOMED | No mapping | Provider | 593 |
| SNOMED | No mapping | Race | 40 |
| SNOMED | No mapping | Relationship | 1 |
| SNOMED | No mapping | Route | 2 |
| SNOMED | No mapping | Spec Anatomic Site | 113 |
| SNOMED | Observation | Condition | 107 |
| SNOMED | Observation | Condition/Observation | 15 |
| SNOMED | Observation | Device | 110 |
| SNOMED | Observation | Drug | 1211 |
| SNOMED | Observation | Drug/Observation | 2 |
| SNOMED | Observation | Geography | 235 |
| SNOMED | Observation | Measurement | 3678 |
| SNOMED | Observation | Meas Value | 3002 |
| SNOMED | Observation | Meas Value/Observation | 1 |
| SNOMED | Observation | No mapping | 13793 |
| SNOMED | Observation | Observation/Procedure | 5 |
| SNOMED | Observation | Procedure | 943 |
| SNOMED | Observation | Regimen | 9 |
| SNOMED | Observation | Relationship | 27 |
| SNOMED | Observation | Spec Anatomic Site | 100 |
| SNOMED | Observation | Specimen | 1 |
| SNOMED | Observation | Unit | 1 |
| SNOMED | Observation | Visit | 2 |
| SNOMED | Observation/Unit | No mapping | 1 |
| SNOMED | Procedure | Condition | 7 |
| SNOMED | Procedure | Device | 4 |
| SNOMED | Procedure | Drug | 258 |
| SNOMED | Procedure | Drug/Procedure | 53 |
| SNOMED | Procedure | Measurement | 2339 |
| SNOMED | Procedure | Measurement/Procedure | 1 |
| SNOMED | Procedure | No mapping | 640 |
| SNOMED | Procedure | Observation | 2129 |
| SNOMED | Procedure | Observation/Procedure | 3 |
| SNOMED | Relationship | No mapping | 7 |
| SNOMED | Relationship | Observation | 7 |
| SNOMED | Route | No mapping | 73 |
| SNOMED | Spec Anatomic Site | Condition | 3 |
| SNOMED | Spec Anatomic Site | Condition/Observation | 1 |
| SNOMED | Spec Anatomic Site | No mapping | 181 |
| SNOMED | Spec Anatomic Site | Observation | 11 |
| SNOMED | Spec Anatomic Site | Specimen | 1 |
| SNOMED | Spec Disease Status | Meas Value | 3 |
| SNOMED | Specimen | No mapping | 8 |
| SNOMED | Specimen | Procedure | 2 |
| SNOMED | Unit | Device/Unit | 1 |
| SNOMED | Unit | No mapping | 3 |
| SNOMED | Unit | Observation | 2 |
| SNOMED Veterinary | Condition | Measurement | 1 |
| SNOMED Veterinary | Condition | No mapping | 3 |
| SNOMED Veterinary | Condition | Observation | 8 |
| SPL | No mapping | Drug | 1 |
| SUS | Device | No mapping | 1 |
| SUS | Measurement | No mapping | 1 |
| SUS | Measurement | Observation | 3 |
| SUS | Observation | No mapping | 12 |
| SUS | Observation | Procedure | 12 |
| SUS | Procedure | Measurement | 34 |
| SUS | Procedure | Measurement/Procedure | 1 |
| SUS | Procedure | No mapping | 10 |
| SUS | Procedure | Observation | 13 |
| UCUM | New concept | Unit | 2 |
| UK Biobank | Condition | Measurement | 3 |
| UK Biobank | Condition | Observation | 192 |
| UK Biobank | Condition/Observation | Observation | 1 |
| UK Biobank | Measurement | Condition | 2 |
| UK Biobank | No mapping | Condition | 2 |
| UK Biobank | No mapping | Observation | 1 |
| UK Biobank | Observation | Gender | 2 |
| UK Biobank | Observation | Measurement | 11 |
| UK Biobank | Observation | No mapping | 1 |
| UK Biobank | Observation | Provider | 1 |
| UK Biobank | Procedure | Condition | 2 |
| UK Biobank | Procedure | Measurement | 2 |
| VANDF | Drug | No mapping | 1 |
New vocabularies added
there were no changes here
New vocabulary dependencies
| source vocabulary_id | target vocabulary_id | count |
|---|---|---|
| CIM10 | LOINC | 1 |
| ICD10 | LOINC | 1 |
| ICD10CM | LOINC | 144 |
| ICD10CN | LOINC | 3 |
| ICD10GM | LOINC | 1 |
| ICD10PCS | SNOMED | 4 |
| ICD9CM | LOINC | 1 |
| KCD7 | LOINC | 1 |
| MedDRA | Cancer Modifier | 87 |
| MedDRA | RxNorm Extension | 1 |
| OPCS4 | CVX | 5 |
| OPCS4 | LOINC | 2 |
| OPCS4 | RxNorm Extension | 5 |
| OPS | LOINC | 2 |
| Read | ICDO3 | 1 |
| Read | LOINC | 16 |
| SNOMED | ABMS | 25 |
| SNOMED | dm+d | 206261 |
| SNOMED | Ethnicity | 4 |
| SNOMED | HemOnc | 9 |
| SNOMED | HES Specialty | 24 |
| SNOMED | ICDO3 | 1 |
| SNOMED | Medicare Specialty | 163 |
| SNOMED | NUCC | 219 |
| SNOMED | Provider | 162 |
| UK Biobank | Cancer Modifier | 1 |
| UK Biobank | Gender | 2 |
If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650