Merge pull request nf-core#108 from nf-core/dev

Patch release 1.3.1
PixelgenTechnologies · Jul 31, 2024 · 511dd17 · 511dd17
2 parents bf49230 + 51d0486
commit 511dd17
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,12 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [[1.3.1](https://github.com/nf-core/pixelator/releases/tag/1.3.1)] - 2024-07-31
+
+### Enhancements & fixes
+
+- [[PR #107](https://github.com/nf-core/pixelator/pull/107)] - Fix conda version tag to use pixelator 0.18.2
+
 ## [[1.3.0](https://github.com/nf-core/pixelator/releases/tag/1.3.0)] - 2024-07-17
 
 ### Enhancements & fixes

diff --git a/modules/local/pixelator/collect_metadata.nf b/modules/local/pixelator/collect_metadata.nf
@@ -6,7 +6,7 @@ process PIXELATOR_COLLECT_METADATA {
     label 'process_single'
     cache false
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/list_options.nf b/modules/local/pixelator/list_options.nf
@@ -2,7 +2,7 @@ process PIXELATOR_LIST_OPTIONS {
     label 'process_single'
 
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/amplicon/main.nf b/modules/local/pixelator/single-cell/amplicon/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_AMPLICON {
     label 'process_low'
 
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/analysis/main.nf b/modules/local/pixelator/single-cell/analysis/main.nf
@@ -2,7 +2,7 @@ process PIXELATOR_ANALYSIS {
     tag "$meta.id"
     label 'process_medium'
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/annotate/main.nf b/modules/local/pixelator/single-cell/annotate/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_ANNOTATE {
     label 'process_high'
 
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/collapse/main.nf b/modules/local/pixelator/single-cell/collapse/main.nf
@@ -2,7 +2,7 @@ process PIXELATOR_COLLAPSE {
     tag "$meta.id"
     label 'process_medium'
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/demux/main.nf b/modules/local/pixelator/single-cell/demux/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_DEMUX {
     label 'process_medium'
 
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/graph/main.nf b/modules/local/pixelator/single-cell/graph/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_GRAPH {
     label 'process_high'
 
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/layout/main.nf b/modules/local/pixelator/single-cell/layout/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_LAYOUT {
     label 'process_medium'
 
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/qc/main.nf b/modules/local/pixelator/single-cell/qc/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_QC {
     label 'process_medium'
 
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/modules/local/pixelator/single-cell/report/main.nf b/modules/local/pixelator/single-cell/report/main.nf
@@ -3,7 +3,7 @@ process PIXELATOR_REPORT {
     label 'process_low'
 
 
-    conda "bioconda::pixelator=0.17.1"
+    conda "bioconda::pixelator=0.18.2"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
         'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"

diff --git a/nextflow.config b/nextflow.config
@@ -313,7 +313,7 @@ manifest {
     description     = """Pipeline for analysis of Molecular Pixelation assays"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.3.0'
+    version         = '1.3.1'
     doi             = '10.1101/2023.06.05.543770'
 }