Change default layout algorithm to wpmds_3d

PixelgenTechnologies · Jul 11, 2024 · 6acc037 · 6acc037
1 parent faec0f4
commit 6acc037
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -80,7 +80,7 @@ params {
 
     // layout options
     no_node_marker_counts = false
-    layout_algorithm = "pmds_3d"
+    layout_algorithm = "wpmds_3d"
 
     // skip options
     skip_report   = false

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -402,7 +402,7 @@
                     "description": "Select a layout algorithm to use. This can be specified as a comma separated list to compute multiple layouts. Possible values are: fruchterman_reingold, fruchterman_reingold_3d, kamada_kawai, kamada_kawai_3d, pmds, pmds_3d",
                     "type": "string",
                     "pattern": "(\\S+)?(,\\S+)*",
-                    "default": "pmds_3d"
+                    "default": "wpmds_3d"
                 }
             }
         },