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Update changelog
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johandahlberg committed Nov 13, 2024
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9 changes: 7 additions & 2 deletions CHANGELOG.md
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Expand Up @@ -17,8 +17,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Added

_ Add `depth` column to `discarded_edgelist.parquet` output of the GRAPH stage that indicates at which refinement iteration the edge is removed.
_ Add `edges_removed_in_multiplet_recovery_first_iteration`, `edges_removed_in_multiplet_recovery_refinement` and `fraction_edges_removed_in_refinement` to graph report.json.
- Add `depth` column to `discarded_edgelist.parquet` output of the GRAPH stage that indicates at which refinement iteration the edge is removed.
- Add `edges_removed_in_multiplet_recovery_first_iteration`, `edges_removed_in_multiplet_recovery_refinement` and `fraction_edges_removed_in_refinement` to graph report.json.
- Add `is_potential_doublet` and `n_edges_to_split_doublet` columns to adata.obs.
- Add `fraction_potential_doublets` and `n_edges_to_split_potential_doublets` to annotate report.json.
- Add `--max-edges-to-split` option to `graph` to specify the maximum number of edges that can be removed between two sub-components during multiplet recovery.
Expand All @@ -30,6 +30,11 @@ _ Add `edges_removed_in_multiplet_recovery_first_iteration`, `edges_removed_in

- Remove the `components_recovered.csv` output from the GRAPH stage.


### Fixed

- better error message when the number of nodes is lower than the number of requested dimensions in `pmds_layout`.

## [0.18.3] - 2024-09-26

### Fixed
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