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Release 0.15.0 prep #24

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merged 5 commits into from
Oct 16, 2023
Merged

Release 0.15.0 prep #24

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b09c78e
feat: update action workflow to use python 3.11
fbdtemme Oct 13, 2023
ed31369
chore: update CHANGELOG.md
fbdtemme Oct 13, 2023
6bb418d
docs: add more badges, add quay.io biocontainers link
fbdtemme Oct 13, 2023
2f400ed
chore: Update CHANGELOG
fbdtemme Oct 16, 2023
1d36fca
chore: update poetry.lock
fbdtemme Oct 16, 2023
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4 changes: 2 additions & 2 deletions .github/workflows/checks.yml
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Expand Up @@ -56,7 +56,7 @@ jobs:
- name: Set up Python environment
uses: ./.github/actions/setup-python
with:
python-version: "3.10"
python-version: "3.11"

- name: flake8 linter
uses: py-actions/flake8@v2
Expand Down Expand Up @@ -109,7 +109,7 @@ jobs:
- name: Set up Python environment
uses: ./.github/actions/setup-python
with:
python-version: "3.10"
python-version: "3.11"

- name: Install dependencies
run: |
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2 changes: 1 addition & 1 deletion .github/workflows/docs.yml
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Expand Up @@ -56,7 +56,7 @@ jobs:
- name: Set up Python environment
uses: ./.github/actions/setup-python
with:
python-version: "3.10"
python-version: "3.11"

- name: Create dependencies file
run: |
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3 changes: 2 additions & 1 deletion .github/workflows/tests.yml
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Expand Up @@ -54,6 +54,7 @@ jobs:
fail-fast: false
matrix:
py:
- "3.11"
- "3.10"
- "3.9"
- "3.8"
Expand Down Expand Up @@ -112,7 +113,7 @@ jobs:
- name: Set up Python environment
uses: ./.github/actions/setup-python
with:
python-version: "3.10"
python-version: "3.11"

- uses: supplypike/setup-bin@v3
with:
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9 changes: 6 additions & 3 deletions CHANGELOG.md
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Expand Up @@ -5,15 +5,18 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [0.15.0] - UNRELEASED
## [0.15.0]- 2023-10-16

### Added

* Add support for Python 3.11
* Add support for Python 3.11.
* Add early enablement work for a networkx backend for the graph stage.

### Fixed

* A bug where aggregating data did not add the correct sample, and unique component columns
* Fix report color axis in report figures not updating when selecting markers or cell types.
* Remove placeholder links in report tooltips.
* Fix a bug where aggregating data did not add the correct sample, and unique component columns.


## [0.14.0] - 2023-10-05
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15 changes: 9 additions & 6 deletions README.md
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@@ -1,13 +1,13 @@
# Pixelator


![python-version](https://img.shields.io/badge/python-3.8%20%7C%203.9%20%7C%203.10-blue)
![python-version](https://img.shields.io/badge/python-3.8%20%7C%203.9%20%7C%203.10%20%7C%203.11-blue)
[![License: GPL v2](https://img.shields.io/badge/License-GPL_v2-blue.svg)](https://www.gnu.org/licenses/old-licenses/gpl-2.0.en.html)
[![DOI](https://img.shields.io/badge/DOI-10.1101/2023.06.05.543770-B31B1B.svg)](https://www.biorxiv.org/content/10.1101/2023.06.05.543770v1)
![conda](https://anaconda.org/bioconda/pixelator/badges/version.svg)
![pypi](https://img.shields.io/pypi/v/pixelgen-pixelator)

[//]: # (TODO: Enable this once available)
[//]: # (![conda](https://anaconda.org/bioconda/pixelator/badges/version.svg))
[//]: # (![pypi](https://img.shields.io/pypi/v/pixelgen-pixelator))

[![Tests](https://github.com/PixelgenTechnologies/pixelator/actions/workflows/tests.yml/badge.svg)](https://github.com/PixelgenTechnologies/pixelator/actions/workflows/tests.yml)

[**Documentation**](#documentation) |
[**Installation**](#installation) |
Expand Down Expand Up @@ -69,6 +69,8 @@ pip install .

### Using docker



The `pixelator` command-line tool can be run with docker images available on
the [GitHub container registry](https://github.com/PixelgenTechnologies/pixelator/pkgs/container/pixelator).

Expand All @@ -77,6 +79,8 @@ docker pull ghcr.io/pixelgentechnologies/pixelator:latest
docker run ghcr.io/pixelgentechnologies/pixelator:latest pixelator --help
```

You can also use the containers provided by the biocontainers project on [quay.io](https://quay.io/repository/biocontainers/pixelator).

## Contributing

Contribution are welcome!
Expand Down Expand Up @@ -115,4 +119,3 @@ A non-exhaustive list of contributors follows:

- Filip Karlsson ([@fika-pixelgen](https://github.com/fika-pixelgen))
- Max Karlsson ([@maxkarlsson](https://github.com/maxkarlsson))

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