SSRG-v2.0.1a

Fixed an issue with command -v $program on Ubuntu 20.04+ that would prevent the shell from returning the expected values. Changed to echo $(command -v $program) as a workaround.

SSRG-v2.0.1

• Minor commits.
• New release created to integrate with Zenodo.

SSRG-v2.0

Stable version:

• Coded minified and cleaned overall + deleted obsolete scripts and files.
• README.md rewritten for simplicity.
• Folders restructured for clarity
• get_SNPs.pl; dropped support for BWA (now obsolete) and FreeBayes (partial implementation was iffy).
• get_SRA.pl rewritten to take advantage of fasterq-dump.

SSRG-v1.9

Latest stable version before major changes to increase code readability and maintainability