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65 Open 143 Closed
65 Open 143 Closed
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Issues list

Time-dependent rate laws?
#275 opened May 17, 2024 by hodgensc
1
TotalRate keyword is ignored in generating .net, SBML, and other outputs
#270 opened Dec 21, 2023 by jrfaeder
@jrfaeder
SSA performance bug regarding order of reactions
#265 opened Jun 28, 2023 by leon9812
4
Bundled CVODE contains CMake script with C99 compatibility issue
#262 opened Dec 11, 2022 by fweimer-rh
1
Disallow multiple bonds per component
#260 opened Aug 5, 2022 by ASinanSaglam
visualize regulatory graphs should automatically combine forward and reverse rule nodes enhancement
#259 opened Jul 15, 2022 by jrfaeder
Missing compartment topology connections in VCell bngl output
#246 opened Apr 14, 2022 by jrfaeder
1
BioNetGen 2.8.0 appears to change the case requirements for states
#245 opened Feb 27, 2022 by jonrkarr
1
BUG: Using "<" in PatternQuantifier results in invalid XML
#234 opened Sep 21, 2021 by cjarmstrong97
Handling of reversible reaction across compartments enhancement Priority-Medium
#232 opened Jul 22, 2021 by dweindl
6
Automate releasing to BioSimulators enhancement Priority-High
#230 opened Jun 8, 2021 by jonrkarr
Current implementation of builtin time() function in BNGL gives inaccurate results
#222 opened May 26, 2020 by jrfaeder
2
Some output functions can't handle spaces in pathnames
#220 opened Dec 6, 2019 by jrfaeder
Circular function definitions create infinite loop
#217 opened Oct 18, 2019 by jrfaeder
Copy parameter comments from BNGL to NET
#216 opened Aug 1, 2019 by tebuck
Rule with high product-side symmetry causes BNG to hang while reading in model Usability
#214 opened Jun 10, 2019 by lh64
User-defined functions cannot be accessed in Mex-file.
#212 opened Apr 3, 2019 by jrfaeder
1
Integrator tolerance
#208 opened Nov 5, 2018 by jrfaeder
Perform multiple stochastic runs and generate statistics enhancement
#193 opened Dec 22, 2017 by jrfaeder
1
Support for Sundials 3* / 4* / 5* enhancement
#190 opened Nov 9, 2017 by sagitter
2
add examples validations for undocumented bng features
#175 opened Jul 4, 2016 by jjtapia
Support Arrhenius rate laws in RateLaw::toXML
#173 opened May 15, 2016 by lh64
Contents of the BioNetGen/Models2 directory
#170 opened Apr 19, 2016 by rhclark
1
Models with extremely high symmetry in the molecule definition bog down BioNetGen
#165 opened Mar 2, 2016 by jjtapia
BioNetGen model executable in Python (similar to Mex) enhancement
#164 opened Feb 26, 2016 by johnsekar
ProTip! no:milestone will show everything without a milestone.