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Spatial Transmission

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@KCGallagher KCGallagher released this 01 Mar 11:35
· 1894 commits to main since this release
v0.0.2
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Model State

This version of the software is capable of a full simulation, output and visualisation with spatial dependence and visualisation. It does not have complete implementation of place-wise infection, nor complete within-host progression. It may be used as a basic agent-based model, within the framework of the Ferguson model, for benchmarking further additions to the code. It is not intended as a public release, not a complete implementation of the Ferguson model.

What's Changed

This includes:

  • Definition of a cells' location, and methods to set this (on an individual and population-wide basis)
  • A spatial sweep to allow cross-infection between cells, with weighting by distance between the cells
  • An output logger that outputs .csv files, with subsequent example plotting routines
  • A plotter capable of representing spatial dependence (to show transmission between cells) using Voronoi tessellation
  • Capability to read in a population from an input .csv file (and also output the current population)
  • Ability to set the random seed for a simulation, to aid reproducibility

Full Changelog: v0.0.1...v0.0.2

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