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MikeLippincott wants to merge 46 commits intoWayScience:mainWayScience/live_cell_timelapse_apoptosis_analysis:mainfrom MikeLippincott:harmonize_branchMikeLippincott/live_cell_timelapse_apoptosis_analysis:harmonize_branchCopy head branch name to clipboard

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Commits on Mar 25, 2024

• Create README.md

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• setup repo

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• update README

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• license

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• Update .pre-commit-config.yaml

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• address comments

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• comments

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• Update LICENSE.md

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• Update README.md

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• Update data/README.md

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• Update README.md

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• Update README.md

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• comments

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• addressing comments

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• Merge pull request WayScience#1 from WayScience/preprocessing

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• IC

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Commits on Mar 27, 2024

• IC

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Commits on Apr 1, 2024

• run pipelines

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Commits on Apr 2, 2024

• run IC and feature extreaction

  

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Commits on Apr 4, 2024

• extract features

  

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Commits on Apr 5, 2024

• cytomining

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Commits on Apr 8, 2024

• extract features

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Commits on Apr 12, 2024

• reerun to have image names

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Commits on Apr 23, 2024

• Update 2.cellprofiler_ic_processing/pipelines/illum_2ch.cppipe

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• Update 2.cellprofiler_ic_processing/pipelines/illum_4ch.cppipe

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• Update 2.cellprofiler_ic_processing/scripts/perform_ic.py

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• Update 2.cellprofiler_ic_processing/scripts/perform_ic.py

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• Update 3.cellprofiler_analysis/pipelines/analysis_2ch.cppipe

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• address Jenna's comments

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• update for next PR

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• Merge pull request WayScience#2 from MikeLippincott/begin_profiling

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Commits on Apr 26, 2024

• add updated pipelines and env

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Commits on Apr 29, 2024

• Merge pull request WayScience#3 from jenna-tomkinson/update_cp_analysis

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Commits on May 3, 2024

• update cp util script to include plugin dir

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• add check to make sure plugin dir exists

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• Merge pull request WayScience#4 from jenna-tomkinson/update_cp_util_script

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Commits on May 6, 2024

• rerun with preproccess

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• Merge pull request WayScience#5 from MikeLippincott/rerun_analysis

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Commits on May 15, 2024

• merge cytoplasmic channels

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Commits on May 16, 2024

• Update 3.cellprofiler_analysis/pipelines/analysis_4ch.cppipe

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• Update 3.cellprofiler_analysis/pipelines/analysis_4ch.cppipe

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• Update 3.cellprofiler_analysis/pipelines/analysis_4ch.cppipe

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• Merge pull request #6 from MikeLippincott/combine_channels

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Commits on May 28, 2024

• integrate data

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• Merge branch 'data_harmonization' into harmonize_branch

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Commits on Jun 28, 2024

• harmonize data

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