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  • ShenZhen University
  • CN.GuangZhou.ShenZhen University. Health Science Center. BME

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MATLAB 2 1 Updated Nov 25, 2021

Some WholeBrain simulation tests, for now...

Python 13 5 Updated Jul 25, 2024

Repository used to write functions, studies and scripts to run and analyze results of parameter sweeps of TVB-AdEx. Also functional connectivity of the DMN in TVB-AdEx

Jupyter Notebook 3 1 Updated Oct 20, 2023

fMRI Observables library

Python 3 Updated Oct 2, 2023
Python 1 Updated Feb 28, 2024

Whole Brain Simulation with Python and Numba

Python 2 2 Updated Dec 23, 2024

The network structure is based on "Emergence of sensory attenuation based upon the free-energy principle" (https://doi.org/10.1038/s41598-022-18207-7)

Python 5 1 Updated Apr 7, 2022
Jupyter Notebook 5 2 Updated Oct 9, 2024

ACCURATE CORRESPONDING FIBER TRACT SEGMENTATION VIA FIBERGEOMAP LEARNER

Python 6 2 Updated Oct 29, 2021

Brain structure-function modelling (DTI & fMRI process)

Jupyter Notebook 20 5 Updated Dec 12, 2022

[ awr-uh-kuhl, or- ] a person who delivers authoritative, wise, or highly regarded and influential pronouncements.

Python 4 1 Updated May 1, 2024

Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning

Python 20 10 Updated Dec 17, 2024

[MICCAI 2019] Official implementation of the paper "DeepTract: A Probabilistic Deep Learning Framework for White Matter Fiber Tractography" (by Benou and Riklin-Raviv): https://arxiv.org/abs/1812.0…

Python 16 5 Updated Mar 30, 2020

Automatic White Matter Bundle Segmentation

Python 233 75 Updated Oct 17, 2023

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

Python 103 37 Updated Jan 7, 2021

PyTorch implementation of FastSurferCNN

Jupyter Notebook 467 121 Updated Dec 24, 2024

极光官方版本下载页 翻墙 代理 科学上网 外网 加速器 梯子 路由

3,706 457 Updated Aug 13, 2024

for 神经计算建模实战

Jupyter Notebook 50 10 Updated Mar 5, 2024

Port of the automatized MRI processing pipeline to Python using Nipype

Jupyter Notebook 5 3 Updated Aug 14, 2019
Jupyter Notebook 4 6 Updated Jan 31, 2022

Code used for postprocessing analyses in manuscript "Modeling brain dynamics in brain tumor patients using The Virtual Brain" (Aerts et al. 2018; eNeuro, 5 (3) ENEURO.0083-18.2018; DOI: https://doi…

MATLAB 4 3 Updated Aug 27, 2019

Code used for postprocessing analyses in manuscript "Modeling brain dynamics after tumor resection using The Virtual Brain" (Aerts et al. 2019; bioRxiv).

R 2 1 Updated Aug 27, 2019

Fast and parallel C implementation of TVB

Jupyter Notebook 6 7 Updated Feb 28, 2022

Main TVB codebase

Jupyter Notebook 124 110 Updated Dec 4, 2024

Integration between TVB and NEST, for multiscale (co)simulations .

Python 37 25 Updated Oct 28, 2024

INS TNG pipeline for TVB simulations

Python 6 5 Updated Sep 30, 2022

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

Shell 92 31 Updated Dec 13, 2024

Validator for the Brain Imaging Data Structure

JavaScript 186 111 Updated Dec 15, 2024

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

Python 50 26 Updated Sep 27, 2023
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