update concepts

concepts/Adrenaline_dosage.yml

@@ -2,7 +2,7 @@ description: ''
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: ''
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: inputevents
   source: mimiciv
-  unit: ''
+  unit: mg/time
 name: Adrenaline_dosage
 unit: ug/kg/min
-upper_limit: 300
+upper_limit: ''

concepts/Age.yml

@@ -2,7 +2,7 @@ description: Patient's age
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_derived
     table: age
   source: mimiciv
-  unit: ''
+  unit: years
 name: Age
 unit: years
-upper_limit: 300
+upper_limit: '130'

concepts/AirwayPlateauPressure.yml

@@ -2,7 +2,7 @@ description: Airway Plateau Pressure of a patient
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: mmHg
 name: AirwayPlateauPressure
 unit: mmHg
-upper_limit: 300
+upper_limit: '100'

concepts/BodyHeight.yml

@@ -2,7 +2,7 @@ description: Height of a patient's body
 identifiers:
   loinc: 8302-2
   snomed: '1153637007'
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: cm
 name: BodyHeight
 unit: cm
-upper_limit: 300
+upper_limit: '300'

concepts/BodyTemperature.yml

@@ -2,7 +2,7 @@ description: Temperature of a patient's body, irrespective of site
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: '20'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: °C
 name: BodyTemperature
-unit: "\xB0C"
-upper_limit: 300
+unit: °C
+upper_limit: '45'

concepts/BodyWeight.yml

@@ -2,7 +2,7 @@ description: Weight of a patien's body
 identifiers:
   loinc: 29463-7
   snomed: '27113001'
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: kg
 name: BodyWeight
 unit: kg
-upper_limit: 300
+upper_limit: '500'

concepts/BreathingRate.yml

@@ -2,7 +2,7 @@ description: Actual breathing rate of patient
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: 1/min
 name: BreathingRate
 unit: 1/min
-upper_limit: 300
+upper_limit: '100'

concepts/Creatinine_absolute_serum.yml

@@ -2,7 +2,7 @@ description: ''
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -14,4 +14,4 @@ mapper:
   unit: ''
 name: Creatinine_absolute_serum
 unit: mg/dl
-upper_limit: 300
+upper_limit: '1000000'

concepts/DiastolicBloodPressue_Arterial_Invasive.yml

@@ -2,7 +2,7 @@ description: Diastolic arterial pressure of a patient
 identifiers:
   loinc: 76213-8
   snomed: '251073000'
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: mmHg
 name: DiastolicBloodPressue_Arterial_Invasive
 unit: mmHg
-upper_limit: 300
+upper_limit: '200'

concepts/DiastolicBloodPressue_Arterial_noninvasive.yml

@@ -1,8 +1,8 @@
-description: Diastolic venous pressure of a patient
+description: Diastolic arterial pressure of a patient
 identifiers:
   loinc: ''
   snomed: '251074006'
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: mmHg
 name: DiastolicBloodPressue_Arterial_noninvasive
 unit: mmHg
-upper_limit: 300
+upper_limit: '200'

concepts/Dobutamine_dosage.yml

@@ -2,7 +2,7 @@ description: ''
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: ''
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: inputevents
   source: mimiciv
-  unit: ''
+  unit: mg/time
 name: Dobutamine_dosage
 unit: ug/kg/min
-upper_limit: 300
+upper_limit: ''

concepts/FiO2.yml

@@ -2,7 +2,7 @@ description: Inspired oxygen concentration of a patient
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: '%'
 name: FiO2
-unit: 1/1
-upper_limit: 300
+unit: '%'
+upper_limit: '100'

concepts/Gender.yml

@@ -2,7 +2,7 @@ description: Patient's gender
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: ''
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -14,4 +14,4 @@ mapper:
   unit: ''
 name: Gender
 unit: ''
-upper_limit: 300
+upper_limit: ''

concepts/HeartRate.yml

@@ -1,18 +1,17 @@
+description: heart rate of a patient, source agnostic
+identifiers:
+  loinc: 8867-4
+  snomed: '364075005'
+lower_limit: '0'
+mapper:
+- klass: MimicObservationMapper
+  params:
+    constraints:
+      itemid: '220045'
+    schema: mimiciv_icu
+    table: chartevents
+  source: mimiciv
+  unit: bpm
 name: HeartRate
-description: Heart rate is the speed of the heartbeat measured by the number of contractions of the heart per minute (bpm).
 unit: bpm
-upper_limit: 300
-lower_limit: 0
-identifiers: 
-  snomed: "364075005"
-  loinc: "8867-4"
-#schema: FHIRObservation
-mapper:
-  - klass: MimicObservationMapper
-    source: mimic
-    unit: bpm
-    params:
-      schema: mimiciv_icu
-      table: chartevents
-      constraints:
-        itemid: "220045"
+upper_limit: '300'

concepts/MeanBloodPressue_Arterial_Invasive.yml

@@ -2,7 +2,7 @@ description: Mean arterial pressure of a patient
 identifiers:
   loinc: ''
   snomed: '251075007'
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: mmHg
 name: MeanBloodPressue_Arterial_Invasive
 unit: mmHg
-upper_limit: 300
+upper_limit: '200'

concepts/MeanBloodPressue_Arterial_Noninvasive.yml

@@ -1,8 +1,8 @@
-description: Diastolic venous pressure of a patient
+description: Diastolic arterial pressure of a patient
 identifiers:
   loinc: ''
   snomed: '174255007'
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: mmHg
 name: MeanBloodPressue_Arterial_Noninvasive
 unit: mmHg
-upper_limit: 300
+upper_limit: '200'

concepts/Norepinephrine_dosage.yml

@@ -2,7 +2,7 @@ description: ''
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: ''
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: inputevents
   source: mimiciv
-  unit: ''
+  unit: mg/time
 name: Norepinephrine_dosage
 unit: ug/kg/min
-upper_limit: 300
+upper_limit: ''

concepts/OxygenSaturation_Peripheral.yml

@@ -2,7 +2,7 @@ description: Oxygen Saturation, irrespective of sample site
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: '%'
 name: OxygenSaturation_Peripheral
 unit: '%'
-upper_limit: 300
+upper_limit: '100'

concepts/PEEP.yml

@@ -2,7 +2,7 @@ description: Positive end-expiratory pressure
 identifiers:
   loinc: ''
   snomed: ''
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: cm H2O
 name: PEEP
 unit: cm H2O
-upper_limit: 300
+upper_limit: '40'

concepts/SystolicBloodPressure_Arterial_Invasive.yml

@@ -2,7 +2,7 @@ description: Systolic arterial pressure of a patient
 identifiers:
   loinc: 76215-3
   snomed: '251071003'
-lower_limit: 0
+lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: ''
+  unit: mmHg
 name: SystolicBloodPressure_Arterial_Invasive
 unit: mmHg
-upper_limit: 300
+upper_limit: '300'