remove blank space in cmH2O. Renamed years to year.

aidh-ms · Jul 22, 2024 · a180646 · a180646
1 parent 4fc9609
commit a180646
Show file tree

Hide file tree

Showing 4 changed files with 13 additions and 11 deletions.
diff --git a/concepts/Age.yml b/concepts/Age.yml
@@ -1,17 +1,19 @@
 description: Patient's age
 identifiers:
-  loinc: ''
-  snomed: ''
+  loinc: '30525-0'
+  snomed: '397669002'
 lower_limit: '0'
 mapper:
 - klass: MimicObservationMapper
   params:
-    constraints:
-      itemid: ''
+    fields:
+      value: age
+      timestamp: admittime
+    constraints: {}
     schema: mimiciv_derived
     table: age
   source: mimiciv
-  unit: years
+  unit: year
 name: Age
-unit: years
+unit: year
 upper_limit: '130'
diff --git a/concepts/PEEP.yml b/concepts/PEEP.yml
@@ -11,7 +11,7 @@ mapper:
     schema: mimiciv_icu
     table: chartevents
   source: mimiciv
-  unit: cm H2O
+  unit: cmH2O
 name: PEEP
-unit: cm H2O
+unit: cmH2O
 upper_limit: '40'
diff --git a/concepts/SystolicBloodPressure.yml b/concepts/SystolicBloodPressure.yml
@@ -9,7 +9,7 @@ identifiers:
 schema: FHIRObservation
 mapper:
   - klass: MimicObservationMapper
-    source: mimic
+    source: mimiciv
     unit: mmHg
     params:
       schema: mimiciv_icu

diff --git a/main_mapping.csv b/main_mapping.csv
@@ -12,9 +12,9 @@ UrineVolume,Urine Volume measured at a certain point in time,TRUE,ml,10000,0,,,F
 BodyTemperature,"Temperature of a patient's body, irrespective of site",TRUE,°C,45,20,,386725007 |Body temperature (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_icu,chartevents,223762,°C,,,,,
 OxygenSaturation_Peripheral,"Oxygen Saturation, irrespective of sample site",TRUE,%,100,0,,103228002 |Hemoglobin saturation with oxygen (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_icu,chartevents,220227,%,,,,,
 Gender,Patient's gender,TRUE,,,,,263495000 |Gender (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_icu,chartevents,226228,,,,,,
-Age,Patient's age,TRUE,years,130,0,,424144002 |Current chronological age (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_derived,age,,years,,,,,
+Age,Patient's age,TRUE,year,130,0,,424144002 |Current chronological age (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_derived,age,,year,,,,,
 FiO2,Inspired oxygen concentration of a patient,TRUE,%,100,0,,250774007 |Inspired oxygen concentration (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_icu,chartevents,223835,%,,,,,
-PEEP,Positive end-expiratory pressure,TRUE,cm H2O,40,0,,250854009 |Positive end expiratory pressure (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_icu,chartevents,224700,cm H2O,,,,,
+PEEP,Positive end-expiratory pressure,TRUE,cmH2O,40,0,,250854009 |Positive end expiratory pressure (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_icu,chartevents,224700,cmH2O,,,,,
 BreathingRate,Actual breathing rate of patient,TRUE,1/min,100,0,,86290005 |Respiratory rate (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_icu,chartevents,224690,1/min,,,,,
 TidalVolume,Actual tidal volume of a patient,TRUE,ml,10000,0,,13621006 |Tidal volume (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_icu,chartevents,224685,ml,,,,,
 AirwayPlateauPressure,Airway Plateau Pressure of a patient,TRUE,mmHg,100,0,,698822002 |Airway plateau pressure (observable entity)|,FHIRObservation,,,MimicObservationMapper,mimiciv_icu,chartevents,224696,mmHg,,,,,