GEO_dataset_processing

Table of Contents Objective Procedures Results Conclusion Outlook for the next taks Note and Reference

Objective

  Time estimated: 60 mins; taken 60 mins; date started: 2020-01-30; date completed: 2020-02-1

Procedures

Results

• feedback on first attempt

GSE113711

CAGE profiling after treatment with JQ1 BET inhibitor in lung cancer cell line

Looks OK, since they were able to do differential expression with it and edgeR lists CAGE-seq as a use case. Good to go

• my dataset: GSE113493
• title: Global transcriptional profiling changes upon knockdown of G9a in human non-small cell lung cancer cells
• brief notes

• what is G9a:

• a histone methyltransferase responsible for lysine 9 (Lys 9) of histone H3 (H3K9)
• potential therapeutic target for non-small cell lung cancer (NSCLC)

• experiment purpose,method and conclusion

Conclusion

Outlook for the next taks

Note and Reference