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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 67 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 36 9

  3. CoreGx CoreGx Public

    Shared code for both PharmacoGx and RadioGx

    R 2 3

  4. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 1 1

Repositories

Showing 10 of 183 repositories
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    bhklab/readii’s past year of commit activity
    Python 3 MIT 0 16 (1 issue needs help) 0 Updated Nov 28, 2024
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools’s past year of commit activity
    Python 36 MIT 9 20 1 Updated Nov 28, 2024
  • analyze_readii_outputs Public

    Code for analyzing outputs from the READII package or the readii-orcestra pipeline.

    bhklab/analyze_readii_outputs’s past year of commit activity
    Jupyter Notebook 1 MIT 0 11 (1 issue needs help) 0 Updated Nov 28, 2024
  • readii-fmcib Public

    Taming the unicorn that is FMCIB

    bhklab/readii-fmcib’s past year of commit activity
    Python 1 MIT 0 3 0 Updated Nov 28, 2024
  • handbook Public

    Lab Handbook For BHKLab

    bhklab/handbook’s past year of commit activity
    2 0 25 (2 issues need help) 4 Updated Nov 27, 2024
  • Xeva Public

    XEnograft Visualization & Analysis

    bhklab/Xeva’s past year of commit activity
    R 10 5 5 0 Updated Nov 27, 2024
  • genefu Public

    R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.

    bhklab/genefu’s past year of commit activity
    HTML 25 13 5 1 Updated Nov 27, 2024
  • ORCESTRA Public

    ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

    bhklab/ORCESTRA’s past year of commit activity
    JavaScript 4 Apache-2.0 2 15 8 Updated Nov 27, 2024
  • HNSCC_clinical_data_handling Public

    Preprocessing the clinical data from the HNSCC dataset on TCIA

    bhklab/HNSCC_clinical_data_handling’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Nov 22, 2024
  • PredictioR Public
    bhklab/PredictioR’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Nov 21, 2024
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