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Update syngap to v1.2.1 #47894

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Update syngap to v1.2.1 #47894

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b208146
Update syngap to v1.2.1
yanyew May 15, 2024
6d1bcee
Merge branch 'master' into syngap
mencian May 24, 2024
812c840
Merge branch 'bioconda:master' into syngap
yanyew May 25, 2024
5c94b47
Update syngap to v1.2.1
yanyew May 25, 2024
560cf2e
Merge branch 'bioconda:master' into syngap
yanyew Jun 12, 2024
2ec65ac
Update syngap to v1.2.1
yanyew Jun 12, 2024
04ccd7b
Update build.sh
yanyew Jun 12, 2024
878685f
Update meta.yaml
yanyew Jun 12, 2024
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9 changes: 9 additions & 0 deletions recipes/syngap/build.sh
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Original file line number Diff line number Diff line change
@@ -1,12 +1,21 @@
#!/usr/bin/env bash
set -xe
df -h
du -sch $CONDA_PREFIX
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mkdir -p $PREFIX/bin
cp -rf $SRC_DIR/bin $PREFIX/bin
cp -rf $SRC_DIR/scripts $PREFIX/bin
df -h
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cp $SRC_DIR/SynGAP.py $PREFIX/bin
cp $SRC_DIR/initdb.py $PREFIX/bin
df -h
cp $SRC_DIR/master.py $PREFIX/bin
cp $SRC_DIR/dual.py $PREFIX/bin
df -h
cp $SRC_DIR/triple.py $PREFIX/bin
cp $SRC_DIR/custom.py $PREFIX/bin
df -h
cp $SRC_DIR/genepair.py $PREFIX/bin
cp $SRC_DIR/evi.py $PREFIX/bin
cp $SRC_DIR/eviplot.py $PREFIX/bin
df -h
29 changes: 9 additions & 20 deletions recipes/syngap/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,38 +1,24 @@
{% set name = "syngap" %}
{% set version = "1.1.1" %}
{% set version = "1.2.1" %}

package:
name: {{ name }}
version: {{ version }}

source:
url: https://github.com/yanyew/SynGAP/releases/download/v{{ version }}/{{ name }}_v{{ version }}.tar.gz
sha256: 4756cba6ede6cef4d7784a46bc2add4dd5eabf2136b39fc982592d031b55e064
sha256: e3dc525fb6a39c7b23209d9b1f4167bf9ac85e9f95a97a1aafee7d69d9cd3d33

build:
number: 0
entry_points:
- syngap = SynGAP:main
noarch: generic
run_exports:
- python
- biopython
- jcvi
- bedtools
- last
- emboss
- gffread
- seqkit
- diamond
- perl-bioperl
- kneed
- numpy
- pandas
- matplotlib-base
run_exports: '{{ pin_subpackage(name, max_pin="x") }}'

requirements:
bulid:
- python >=3.10
#bulid:
# - python >=3.10
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Please remove the commented out lines.

run:
- python >=3.10
- biopython >=1.81
Expand Down Expand Up @@ -83,7 +69,9 @@ test:
- genepair
- evi
- eviplot
commands:
commands:
- df -h
- du -sch $CONDA_PREFIX
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Remove the debug

- syngap -h
- syngap initdb -h
- syngap master -h
Expand All @@ -93,6 +81,7 @@ test:
- syngap genepair -h
- syngap evi -h
- syngap eviplot -h
- df -h
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about:
home: https://github.com/yanyew/SynGAP
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