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bioio-devs · Oct 18, 2023 · 0e13411 · 0e13411
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: ee1706def11a0152024844a698af8a00
+config: cdbb56ae19bd0e35b18559a93b4f3e53
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/.doctrees/bioio_nd2.doctree b/.doctrees/bioio_nd2.doctree
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/_modules/bioio_nd2/reader.html b/_modules/bioio_nd2/reader.html
@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>bioio_nd2.reader - bioio-nd2 0.1.dev1+g87334b5 documentation</title>
+    <!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
+        <title>bioio_nd2.reader - bioio-nd2 0.1.dev1+gba148f7 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">bioio-nd2 0.1.dev1+g87334b5 documentation</div></a>
+      <a href="../../index.html"><div class="brand">bioio-nd2 0.1.dev1+gba148f7 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+g87334b5 documentation</span>
+  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+gba148f7 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -326,7 +326,7 @@ <h1>Source code for bioio_nd2.reader</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=30e89f9d"></script>
+</div><script src="../../_static/documentation_options.js?v=408ce993"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>

diff --git a/_modules/bioio_nd2/reader_metadata.html b/_modules/bioio_nd2/reader_metadata.html
@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>bioio_nd2.reader_metadata - bioio-nd2 0.1.dev1+g87334b5 documentation</title>
+    <!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
+        <title>bioio_nd2.reader_metadata - bioio-nd2 0.1.dev1+gba148f7 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">bioio-nd2 0.1.dev1+g87334b5 documentation</div></a>
+      <a href="../../index.html"><div class="brand">bioio-nd2 0.1.dev1+gba148f7 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+g87334b5 documentation</span>
+  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+gba148f7 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -271,7 +271,7 @@ <h1>Source code for bioio_nd2.reader_metadata</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=30e89f9d"></script>
+</div><script src="../../_static/documentation_options.js?v=408ce993"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>

diff --git a/_modules/index.html b/_modules/index.html
@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>Overview: module code - bioio-nd2 0.1.dev1+g87334b5 documentation</title>
+    <!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
+        <title>Overview: module code - bioio-nd2 0.1.dev1+gba148f7 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">bioio-nd2 0.1.dev1+g87334b5 documentation</div></a>
+      <a href="../index.html"><div class="brand">bioio-nd2 0.1.dev1+gba148f7 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
 
 
-  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+g87334b5 documentation</span>
+  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+gba148f7 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -231,7 +231,7 @@ <h1>All modules for which code is available</h1>
 
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=30e89f9d"></script>
+</div><script src="../_static/documentation_options.js?v=408ce993"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=32e29ea5"></script>

diff --git a/_static/documentation_options.js b/_static/documentation_options.js
@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.1.dev1+g87334b5',
+    VERSION: '0.1.dev1+gba148f7',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/bioio_nd2.html b/bioio_nd2.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Contributing" href="contributing.html" /><link rel="prev" title="bioio_nd2" href="modules.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>bioio_nd2 package - bioio-nd2 0.1.dev1+g87334b5 documentation</title>
+    <!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
+        <title>bioio_nd2 package - bioio-nd2 0.1.dev1+gba148f7 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
@@ -124,7 +124,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">bioio-nd2 0.1.dev1+g87334b5 documentation</div></a>
+      <a href="index.html"><div class="brand">bioio-nd2 0.1.dev1+gba148f7 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -147,7 +147,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+g87334b5 documentation</span>
+  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+gba148f7 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -203,9 +203,9 @@ <h1>bioio_nd2 package<a class="headerlink" href="#bioio-nd2-package" title="Link
 <section id="submodules">
 <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this heading">#</a></h2>
 </section>
-<section id="bioio-nd2-reader-module">
-<h2>bioio_nd2.reader module<a class="headerlink" href="#bioio-nd2-reader-module" title="Link to this heading">#</a></h2>
-<span class="target" id="module-bioio_nd2.reader"></span><dl class="py class">
+<section id="module-bioio_nd2.reader">
+<span id="bioio-nd2-reader-module"></span><h2>bioio_nd2.reader module<a class="headerlink" href="#module-bioio_nd2.reader" title="Link to this heading">#</a></h2>
+<dl class="py class">
 <dt class="sig sig-object py" id="bioio_nd2.reader.Reader">
 <em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">bioio_nd2.reader.</span></span><span class="sig-name descname"><span class="pre">Reader</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">image</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><span class="pre">Path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fs_kwargs</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Dict</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">,</span></span><span class="w"> </span><span class="pre">Any</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">{}</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/bioio_nd2/reader.html#Reader"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#bioio_nd2.reader.Reader" title="Link to this definition">#</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">Reader</span></code></p>
@@ -271,9 +271,9 @@ <h2>bioio_nd2.reader module<a class="headerlink" href="#bioio-nd2-reader-module"
 </dd></dl>
 
 </section>
-<section id="bioio-nd2-reader-metadata-module">
-<h2>bioio_nd2.reader_metadata module<a class="headerlink" href="#bioio-nd2-reader-metadata-module" title="Link to this heading">#</a></h2>
-<span class="target" id="module-bioio_nd2.reader_metadata"></span><dl class="py class">
+<section id="module-bioio_nd2.reader_metadata">
+<span id="bioio-nd2-reader-metadata-module"></span><h2>bioio_nd2.reader_metadata module<a class="headerlink" href="#module-bioio_nd2.reader_metadata" title="Link to this heading">#</a></h2>
+<dl class="py class">
 <dt class="sig sig-object py" id="bioio_nd2.reader_metadata.ReaderMetadata">
 <em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">bioio_nd2.reader_metadata.</span></span><span class="sig-name descname"><span class="pre">ReaderMetadata</span></span><a class="reference internal" href="_modules/bioio_nd2/reader_metadata.html#ReaderMetadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#bioio_nd2.reader_metadata.ReaderMetadata" title="Link to this definition">#</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">ReaderMetadata</span></code></p>
@@ -295,9 +295,9 @@ <h2>bioio_nd2.reader_metadata module<a class="headerlink" href="#bioio-nd2-reade
 </dd></dl>
 
 </section>
-<section id="module-contents">
-<h2>Module contents<a class="headerlink" href="#module-contents" title="Link to this heading">#</a></h2>
-<p id="module-bioio_nd2">Top-level package for bioio_nd2.</p>
+<section id="module-bioio_nd2">
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-bioio_nd2" title="Link to this heading">#</a></h2>
+<p>Top-level package for bioio_nd2.</p>
 <dl class="py class">
 <dt class="sig sig-object py" id="bioio_nd2.Reader">
 <em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">bioio_nd2.</span></span><span class="sig-name descname"><span class="pre">Reader</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">image</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><span class="pre">Path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fs_kwargs</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Dict</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">,</span></span><span class="w"> </span><span class="pre">Any</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">{}</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/bioio_nd2/reader.html#Reader"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#bioio_nd2.Reader" title="Link to this definition">#</a></dt>
@@ -444,23 +444,23 @@ <h2>Module contents<a class="headerlink" href="#module-contents" title="Link to
             <ul>
 <li><a class="reference internal" href="#">bioio_nd2 package</a><ul>
 <li><a class="reference internal" href="#submodules">Submodules</a></li>
-<li><a class="reference internal" href="#bioio-nd2-reader-module">bioio_nd2.reader module</a><ul>
+<li><a class="reference internal" href="#module-bioio_nd2.reader">bioio_nd2.reader module</a><ul>
 <li><a class="reference internal" href="#bioio_nd2.reader.Reader"><code class="docutils literal notranslate"><span class="pre">Reader</span></code></a><ul>
 <li><a class="reference internal" href="#bioio_nd2.reader.Reader.physical_pixel_sizes"><code class="docutils literal notranslate"><span class="pre">Reader.physical_pixel_sizes</span></code></a></li>
 <li><a class="reference internal" href="#bioio_nd2.reader.Reader.scenes"><code class="docutils literal notranslate"><span class="pre">Reader.scenes</span></code></a></li>
 </ul>
 </li>
 </ul>
 </li>
-<li><a class="reference internal" href="#bioio-nd2-reader-metadata-module">bioio_nd2.reader_metadata module</a><ul>
+<li><a class="reference internal" href="#module-bioio_nd2.reader_metadata">bioio_nd2.reader_metadata module</a><ul>
 <li><a class="reference internal" href="#bioio_nd2.reader_metadata.ReaderMetadata"><code class="docutils literal notranslate"><span class="pre">ReaderMetadata</span></code></a><ul>
 <li><a class="reference internal" href="#bioio_nd2.reader_metadata.ReaderMetadata.get_reader"><code class="docutils literal notranslate"><span class="pre">ReaderMetadata.get_reader()</span></code></a></li>
 <li><a class="reference internal" href="#bioio_nd2.reader_metadata.ReaderMetadata.get_supported_extensions"><code class="docutils literal notranslate"><span class="pre">ReaderMetadata.get_supported_extensions()</span></code></a></li>
 </ul>
 </li>
 </ul>
 </li>
-<li><a class="reference internal" href="#module-contents">Module contents</a><ul>
+<li><a class="reference internal" href="#module-bioio_nd2">Module contents</a><ul>
 <li><a class="reference internal" href="#bioio_nd2.Reader"><code class="docutils literal notranslate"><span class="pre">Reader</span></code></a><ul>
 <li><a class="reference internal" href="#bioio_nd2.Reader.physical_pixel_sizes"><code class="docutils literal notranslate"><span class="pre">Reader.physical_pixel_sizes</span></code></a></li>
 <li><a class="reference internal" href="#bioio_nd2.Reader.scenes"><code class="docutils literal notranslate"><span class="pre">Reader.scenes</span></code></a></li>
@@ -484,7 +484,7 @@ <h2>Module contents<a class="headerlink" href="#module-contents" title="Link to
 
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=30e89f9d"></script>
+</div><script src="_static/documentation_options.js?v=408ce993"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>

diff --git a/contributing.html b/contributing.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="prev" title="bioio_nd2 package" href="bioio_nd2.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>Contributing - bioio-nd2 0.1.dev1+g87334b5 documentation</title>
+    <!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
+        <title>Contributing - bioio-nd2 0.1.dev1+gba148f7 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
@@ -124,7 +124,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">bioio-nd2 0.1.dev1+g87334b5 documentation</div></a>
+      <a href="index.html"><div class="brand">bioio-nd2 0.1.dev1+gba148f7 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -147,7 +147,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+g87334b5 documentation</span>
+  <span class="sidebar-brand-text">bioio-nd2 0.1.dev1+gba148f7 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -348,7 +348,7 @@ <h2>Deploying<a class="headerlink" href="#deploying" title="Link to this heading
 
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=30e89f9d"></script>
+</div><script src="_static/documentation_options.js?v=408ce993"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>