fix: more coding style fixes

brickmanlab · Aug 2, 2024 · ff29455 · ff29455
1 parent df3a35b
commit ff29455
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Showing 4 changed files with 9 additions and 9 deletions.
diff --git a/conf/genomes.config b/conf/genomes.config
@@ -11,4 +11,4 @@ params {
             star        = "${params.genomes_base}/homo_sapiens/10x/refdata-gex-GRCh38-2024-A/star_2.7.10b"
         }
     }
-}
+}
diff --git a/subworkflows/local/make_count_matrix.nf b/subworkflows/local/make_count_matrix.nf
@@ -10,7 +10,7 @@ workflow MAKE_COUNT_MATRIX {
     ch_versions = Channel.empty()
 
     MTX_TO_CSV ( reads )
-    
+
     ch_versions = ch_versions.mix(MTX_TO_CSV.out.versions.first())
 
     emit:

diff --git a/subworkflows/local/starsolo.nf b/subworkflows/local/starsolo.nf
@@ -11,7 +11,7 @@ workflow STARSOLO {
     ch_versions = Channel.empty()
 
     STARSOLO_ALIGN ( reads, index )
-    
+
     ch_versions = ch_versions.mix(STARSOLO_ALIGN.out.versions.first())
 
     emit:

diff --git a/workflows/primeseq.nf b/workflows/primeseq.nf
@@ -43,20 +43,20 @@ workflow PRIMESEQ {
     //
     // MODULE: Run STARSolo
     //
-    ch_reads = ch_samplesheet.map { 
-        meta, fastq -> [ 
-            [ 
-                id: meta.id, 
+    ch_reads = ch_samplesheet.map {
+        meta, fastq -> [
+            [
+                id: meta.id,
                 plate_id: meta.plate_id,
                 whitelist: ,
                 umi_len: 16,
                 umi_start: 13,
                 cb_len: 12,
                 cb_start: 1,
-            ], "CB_UMI_Simple", fastq 
+            ], "CB_UMI_Simple", fastq
         ]
     }
-    STARSOLO ( 
+    STARSOLO (
         ch_reads,
         file("$projectDir/assets/whitelist.tsv", checkIfExists: true),
         ch_star_index
-Original file line number
+Diff line change
@@ Expand Up / @@ -11,4 +11,4 @@ params { @@
                 star        = "${params.genomes_base}/homo_sapiens/10x/refdata-gex-GRCh38-2024-A/star_2.7.10b"
             }
         }
-    }
+    }