Code

Lk pd 2736 doublets#1362

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Merged

ekiernan merged 38 commits intodevelopbroadinstitute/warp:developfrom lk-PD-2736-doubletsbroadinstitute/warp:lk-PD-2736-doubletsCopy head branch name to clipboardOct 2, 2024

+148-120

Commits

Commits on Aug 20, 2024

• adding cell calls as output of merge star outputs for calling cells

  ekiernan

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  3af3631

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• fixing syntax

  ekiernan

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  0b3ad39

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Commits on Aug 21, 2024

• updated h5ad utils to include new warp-tools script for doublets

  ekiernan

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• added test docker to Optimus

  ekiernan

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  8d3fec6

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• fixed womtools

  ekiernan

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  df26128

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• fixed docker name

  ekiernan

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  9e4e14f

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Commits on Aug 22, 2024

• testing new dockers for star-merge-npz and warp-tools to allow keeper cell calcs

  ekiernan

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Commits on Aug 27, 2024

• adding quotes around gex_nhash_id because it is null

  ekiernan

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  4067ecc

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Commits on Sep 18, 2024

• Merge branch 'develop' into lk-PD-2736-doublets

  ekiernan

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  0440776

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• Updated pipeline_versions.txt with all pipeline version information

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  4499866

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Commits on Sep 20, 2024

• updated documentation

  ekiernan

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  66d8f89

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Commits on Sep 21, 2024

• Updated pipeline_versions.txt with all pipeline version information

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  f133e90

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• setting null for multiome

  ekiernan

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  338b886

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• Merge branch 'lk-PD-2736-doublets' of https://github.com/broadinstitute/warp into lk-PD-2736-doublets

  ekiernan

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  b56656c

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• typo

  ekiernan

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  d1dd9f7

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Commits on Sep 23, 2024

• added select first to library metrics

  ekiernan

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  86e3a21

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• fixing broken link in doc test

  ekiernan

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  289b3a3

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• nhash_id optional

  ekiernan

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  dac4de4

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• updating syntax for add_library_tso_doublets

  ekiernan

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  a8539f5

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• Update H5adUtils.wdl

  ekiernan

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  6e1ed35

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• fix brace

  ekiernan

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  278ad86

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• adding bash for optional nhash

  ekiernan

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  f691fbd

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• updated selectfirst for optimus task

  ekiernan

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  5e84c07

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• fixed rbrace

  ekiernan

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  c88419b

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• small change

  ekiernan

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  80a07d6

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• reverting select_first

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  f6b50b7

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Commits on Sep 24, 2024

• adding official docker image tags

  ekiernan

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  30752a5

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• Merge branch 'develop' into lk-PD-2736-doublets

  ekiernan

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  3616a3d

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• added gex and atac nhash_id to Multiome and paired-tag

  ekiernan

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  5235755

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• Merge branch 'lk-PD-2736-doublets' of https://github.com/broadinstitute/warp into lk-PD-2736-doublets

  ekiernan

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  01930c9

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• changelog updates

  ekiernan

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  5b380ae

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• Updated pipeline_versions.txt with all pipeline version information

  actions-user

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  85384f5

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• updating warp-tools and star merge npz dockers on slideseq

  ekiernan

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  5a98363

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Commits on Sep 26, 2024

• added expected_cells as input to h5adUtils

  ekiernan

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  0542a61

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• Merge branch 'develop' into lk-PD-2736-doublets

  ekiernan

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  61e7597

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Commits on Sep 30, 2024

• Updated changelogs

  ekiernan

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  5329e1a

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• Updated readmes for pipeline versions

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  2d31525

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Commits on Oct 2, 2024

• updated verify h5ad gex task

  ekiernan

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  4d6ce44

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