Code

Lk pd 2736 doublets#1362

Code

Merged

ekiernan merged 38 commits intodevelopbroadinstitute/warp:developfrom lk-PD-2736-doubletsbroadinstitute/warp:lk-PD-2736-doubletsCopy head branch name to clipboardOct 2, 2024

+148-120

Commits

Commits on Aug 20, 2024

• adding cell calls as output of merge star outputs for calling cells

  ekiernan

  committed
  3af3631

• fixing syntax

  ekiernan

  committed
  0b3ad39

Commits on Aug 21, 2024

• updated h5ad utils to include new warp-tools script for doublets

  ekiernan

  committed
  1495864

• added test docker to Optimus

  ekiernan

  committed
  8d3fec6

• fixed womtools

  ekiernan

  committed
  df26128

• fixed docker name

  ekiernan

  committed
  9e4e14f

Commits on Aug 22, 2024

• testing new dockers for star-merge-npz and warp-tools to allow keeper cell calcs

  ekiernan

  committed
  fec3ebc

Commits on Aug 27, 2024

• adding quotes around gex_nhash_id because it is null

  ekiernan

  committed
  4067ecc

Commits on Sep 18, 2024

• Merge branch 'develop' into lk-PD-2736-doublets

  ekiernan

  authored
  0440776

• Updated pipeline_versions.txt with all pipeline version information

  actions-user

  committed
  4499866

Commits on Sep 20, 2024

• updated documentation

  ekiernan

  committed
  66d8f89

Commits on Sep 21, 2024

• Updated pipeline_versions.txt with all pipeline version information

  actions-user

  committed
  f133e90

• setting null for multiome

  ekiernan

  committed
  338b886

• Merge branch 'lk-PD-2736-doublets' of https://github.com/broadinstitute/warp into lk-PD-2736-doublets

  ekiernan

  committed
  b56656c

• typo

  ekiernan

  committed
  d1dd9f7

Commits on Sep 23, 2024

• added select first to library metrics

  ekiernan

  committed
  86e3a21

• fixing broken link in doc test

  ekiernan

  committed
  289b3a3

• nhash_id optional

  ekiernan

  committed
  dac4de4

• updating syntax for add_library_tso_doublets

  ekiernan

  committed
  a8539f5

• Update H5adUtils.wdl

  ekiernan

  committed
  6e1ed35

• fix brace

  ekiernan

  committed
  278ad86

• adding bash for optional nhash

  ekiernan

  committed
  f691fbd

• updated selectfirst for optimus task

  ekiernan

  committed
  5e84c07

• fixed rbrace

  ekiernan

  committed
  c88419b

• small change

  ekiernan

  committed
  80a07d6

• reverting select_first

  ekiernan

  committed
  f6b50b7

Commits on Sep 24, 2024

• adding official docker image tags

  ekiernan

  committed
  30752a5

• Merge branch 'develop' into lk-PD-2736-doublets

  ekiernan

  authored
  3616a3d

• added gex and atac nhash_id to Multiome and paired-tag

  ekiernan

  committed
  5235755

• Merge branch 'lk-PD-2736-doublets' of https://github.com/broadinstitute/warp into lk-PD-2736-doublets

  ekiernan

  committed
  01930c9

• changelog updates

  ekiernan

  committed
  5b380ae

• Updated pipeline_versions.txt with all pipeline version information

  actions-user

  committed
  85384f5

• updating warp-tools and star merge npz dockers on slideseq

  ekiernan

  committed
  5a98363

Commits on Sep 26, 2024

• added expected_cells as input to h5adUtils

  ekiernan

  committed
  0542a61

• Merge branch 'develop' into lk-PD-2736-doublets

  ekiernan

  authored
  61e7597

Commits on Sep 30, 2024

• Updated changelogs

  ekiernan

  committed
  5329e1a

• Updated readmes for pipeline versions

  ekiernan

  committed
  2d31525

Commits on Oct 2, 2024

• updated verify h5ad gex task

  ekiernan

  committed
  4d6ce44