v1.3.0

Changes:

• Make app compatible with vep docker v109+ while still backwards compatible with previous versions if needed (closed #19)
• include flag option so additional flags (i.e. --canonical) can be passed in the config (closed #16)
• readme updated to include mention of new flag functionality

v1.1.0

• Input VCF normalisation is now optional to accomodate CNVs. Default is set to true as we expect all SNV vcfs to be normalised to allow for correct annotation with normalised annotation sources.
• Removed specific users from developers
• Minor typo fixes and comment updates
• Addition of --hgvsg option to vep command to enable extraction of hgvs genomic notation. An update for the vep configs that require this is needed if required in the output.

v1.0.0 Modular VEP

What's Included:

• This is the initial release for our DNAnexus implementation of Variant Effect Predictor
• The app was developed to accept multiple custom annotations and plugins described in a config file.
• Example config file in the README and also here