get_homologues-est

This is release 20160215 (v2.0.8) of GET_HOMOLOGUES, which updates install.pl so that Pfam/swissprot downloads works behind NAT and moves TransDecoder to lib/est; transcripts2cds.pl is updated as well.

get_homologues-est

This is release 20160203 (v2.0.7) of GET_HOMOLOGUES, which fixes a recently found bug in get_homologues.pl -c, which mean that pan-genome genes added after a new strain was added were over-estimated.

get_homologues-est

This is release 20160201 (v2.0.6) of GET_HOMOLOGUES, which updated download_genomes_ncbi.pl and the manuals.

get_homologues-est

This is release 20160125 (v2.0.5) of GET_HOMOLOGUES. This release provides the most up-to-date get_homologues.pl and get_homologues-est.pl scripts. A bug in _cluster_make[Homo|Ortho|Inpara]log.pl was fixed which prevented use of the cluster for these tasks in get_homologues.pl, and ended up being done on the master node.

get_homologues-est

This is release 20160120 (v2.0.4) of GET_HOMOLOGUES. This release provides the most up-to-date get_homologues.pl and get_homologues-est.pl scripts. A bug in get_homologues-est.pl -D in local mode was fixed, as it failed to locate a correctly installed Pfam database.

get_homologues-est

This is release 20160113 (v2.0.3) of GET_HOMOLOGUES. This release provides the most up-to-date get_homologues.pl version with several fixes. A bug in get_homologues-est.pl -D was fixed.This script is still being tested with plant CDS and transcripts.

get_homologues-est

This is release 20160111 (v2.0.2) of GET_HOMOLOGUES. This release provides the most up-to-date get_homologues.pl version with several fixes. Script get_homologues-est.pl now uses global $MINSEQLENGTH to filter out too short sequences and the manual includes several more examples and figures.This script is still being tested with plant CDS and transcripts.

get_homologues-est

This is release 20151229 (v2.0.1) of GET_HOMOLOGUES, which runs faster, requires significantly less RAM. This release provides the most up-to-date get_homologues.pl version with several fixes. In addition, this release for the first time includes get_homologues-est.pl, a BLASTN-based script that supports analyses of eukaryotic DNA sequence sets, including both transcriptomes and annotated genomes, which has been and still is being tested with plant data.

get_homologues

This is the last release of the original code base, which was also available at
http://www.eead.csic.es/compbio/soft/gethoms.php and http://maya.ccg.unam.mx/soft/gethoms.php.
This is also the last release providing 32bit x86 binaries, please get in touch if you still need these.