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ewijaya committed Apr 24, 2015
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SLIDESORT-BPR
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Copyright © 2013 Kana Shimizu. All rights reserved.
Chromosomal rearrangement events are caused by abnormal breaking and rejoining
of DNA molecules. They are responsible for many of the cancer related
diseases. Detecting the DNA breaking and repairing mechanism, therefore, may
offer vital clues about the pathologic causes and diagnostic/therapeutic
target of these diseases. But this effort also poses considerable challenges,
because the structural variations and the genomes are different from one
person to another. Intermediate comparison via reference genome could lead to
the loss information. Unlike the current methods which make use the reference
genome, we developed a method to detect the breakpoint reads directly from
observing the differences between two (or more) NGS short reads samples.
Slidesort-BPR is a command line tool implemented in C++.


Slidesort-BPR (Break Point Reads) detector is a reference-free method for
detecting clusters of breakpoints reads from the chromosomal rearrangements.

Input format
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