15 cicd tests #24
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15 cicd tests #24
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kubranarci
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Jan 24, 2024
* HDR estimation module is done * beagle reference problem resolved * Hg37 (#1) * Add files via upload * hg37 changes * hg37 changes * Delete modules/nf-core/bedtools/intersect directory not needed * Delete modules/nf-core/tabix/bgziptabix directory not needed * hg37 changes * hg37 changes * male corrections * minor changes * fake control pipeline is functional (#6) * SV input in samplesheet (#8) * missing sv column * Delete subworkflows/local/breakpoints_segments.nf * Delete results37 directory * 5 no control pipeline bug 3 (#11) * nocontrol workflow fixed * Delete results37 directory * changes implemented (#12) * document updated (#13) * multi-sample ready (#19) * resources optimized (#20) * small changes * 14 create test dataset (#23) * Delete seqc2_testdata_aceseq directory * ACE-seq test dataset * testdataset additions * get beagle ref automatically * annotations testdata * testdata * small changes * beagle ref hg37 added to igenomes * testdata is running hg19 * 15 cicd tests (#24) * Create main.yml * files added * singularity removed and args cleaned * fix * prettier and small fixes * delete some files
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