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kubranarci/README.md

Welcome to My GitHub Profile! 👋

I'm Kübra Narcı, a Bioinformatician at the GHGA Workflows Team/DKFZ, specializing in developing Nextflow pipelines. With a strong passion for creating reproducible and FAIR-compliant workflows, I contribute to advancing bioinformatics standards and tools.

I’m also proud to be a Nextflow Ambassador, actively supporting and promoting the Nextflow community by sharing knowledge and best practices in workflow development.

🔬 About Me

  • Role: Bioinformatician and Bioinformatics Workflow Engineer
  • Location: Heidelberg, Germany
  • Organization: GHGA / DKFZ-ODCF
  • Values: Reproducibility, FAIR Principles, Community Collaboration

As the main developer of nf-core/variantbenchmarking, I focus on providing standardized workflows for benchmarking variant-calling pipelines.

🎓 Workshops

  • FAIR-Compliant Workflow Design: Teaching principles and practices to develop workflows that align with FAIR guidelines.

Whether you’re new to Nextflow or looking to refine your skills, my workshops provide hands-on learning opportunities to deepen your knowledge.

🚀 Projects

Here are some of the key projects I’ve been working on:

🎯 nf-core/variantbenchmarking

A standardized Nextflow pipeline for benchmarking variant-calling workflows, enabling reproducible and FAIR analysis.
View Repository

🧬 Other Workflow Projects

  • Nextflow Indel Calling Workflow: A Nextflow-based indel calling workflow using Platypus.
    View Repository

  • Nextflow SNV Calling Pipeline: A Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF's SNVCallingWorkflow.
    View Repository

  • Nextflow ACE-Seq Pipeline: A Nextflow ACE-Seq calling and annotation pipeline.
    View Repository

📄 CV

View my professional cv

🌟 Highlights

  • Bioinformatician at GHGA: Driving the development of reproducible genomic workflows.
  • Nextflow Ambassador: Actively supporting and promoting the Nextflow community as part of my values.
  • FAIR Principles Advocate: Passionate about creating workflows that are Findable, Accessible, Interoperable, and Reproducible.
  • Workshop Organizer and Educator: Empowering others to succeed in workflow development and reproducibility.

🌐 Connect with Me

Feel free to explore my repositories and reach out if you’d like to collaborate, discuss workflow development, or attend one of my workshops. Let’s work together to advance bioinformatics!

📊 GitHub Stats

Kübra's GitHub Stats

🔥 Streak Stats

GitHub Streak

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  1. ghga-de/nf-platypusindelcalling Public

    This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ

    Python 1

  2. ghga-de/nf-snvcalling Public

    a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow

    Python 1

  3. ghga-de/nf-aceseq Public

    a Nextflow ACE-Seq calling and annotation pipeline based on DKFZ-ODCF/ACEseqWorkflow

    R 1

  4. GHGA-Training/gcb_ngs_harmonisation_workshop Public

    Materials for NGS Harmonization Workshop at GCB 2024

    4 43

  5. nf-core/variantbenchmarking Public

    Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research

    Nextflow 22 12

  6. reproducible_workflows_nextflow Public

    Forked from GHGA-Training/gcb_ngs_harmonisation_workshop

    Materials for Reproducible Workflows with Nextflow and nf-core

    3 17

730 contributions in the last year

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Activity overview

Loading A graph representing kubranarci's contributions from February 25, 2024 to February 28, 2025. The contributions are 64% commits, 15% issues, 13% pull requests, 8% code review.

Contribution activity

February 2025

Created 1 repository

Created a pull request in nf-core/variantbenchmarking that received 7 comments

Opened 12 other pull requests in 4 repositories
Reviewed 9 pull requests in 5 repositories

Created an issue in nf-core/raredisease that received 1 comment

test config igenome configurations are wrong

Description of the bug Hello, Running test profile results with: Genome 'GRCh37' not found in any config files provided to the pipeline. Currently,…

1 comment
Opened 12 other issues in 2 repositories
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