use setup-r-dependencies action (#279) #389
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| --- | |
| name: Publish Catalog 📰 | |
| on: | |
| workflow_call: | |
| secrets: | |
| REPO_GITHUB_TOKEN: | |
| description: | | |
| Github token with write access to the repository | |
| required: false | |
| GCHAT_WEBHOOK: | |
| description: | | |
| Google Chat webhook to send failure notifications | |
| required: false | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: "17 17 * * 3,6" | |
| jobs: | |
| cache-refresh: | |
| name: Refresh Cache ♽ | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'schedule' | |
| steps: | |
| - name: Refresh Cache ♽ | |
| run: | | |
| gh extension install actions/gh-actions-cache | |
| echo "Fetching list of cache keys..." | |
| cacheKeysForPR=$(gh actions-cache list -R $REPO -B $BRANCH -L 100 | cut -f 1 ) | |
| ## Setting this to not fail the workflow while deleting cache keys. | |
| set +e | |
| echo "Deleting caches..." | |
| for cacheKey in $cacheKeysForPR | |
| do { | |
| gh actions-cache delete $cacheKey -R $REPO -B $BRANCH --confirm | |
| } | |
| done | |
| echo "Cache refresh completed." | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| REPO: ${{ github.repository }} | |
| BRANCH: ${{ github.event.repository.default_branch }} | |
| publish-dev: | |
| name: Build & Deploy TLGC (dev) 📖 | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/insightsengineering/rstudio:latest | |
| needs: cache-refresh | |
| if: ${{ always() }} | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Checkout repo 🛎 | |
| uses: actions/[email protected] | |
| - name: Cache artifacts 📀 | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| book/_freeze | |
| key: ${{ runner.os }}-tlg-catalog-dev | |
| - name: Normalize variables 📏 | |
| run: | | |
| echo "gchat_webhook=${{ secrets.GCHAT_WEBHOOK }}" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Setup R dependencies 🎦 | |
| uses: insightsengineering/setup-r-dependencies@v1 | |
| env: | |
| GITHUB_PAT: ${{ steps.github-token.outputs.token }} | |
| with: | |
| repository-path: "./package" | |
| skip-desc-branch: true | |
| skip-desc-dev: true | |
| repository-list: "r-universe-dev=https://pharmaverse.r-universe.dev/, PPM=PPM@latest" | |
| cache-version: "dev" | |
| - name: Render catalog 🖨 | |
| run: | | |
| quarto render --profile development | |
| shell: bash | |
| working-directory: book | |
| - name: Create artifact 📂 | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| run: | | |
| zip -r9 ../../site.zip * | |
| shell: bash | |
| working-directory: book/_site | |
| - name: Upload docs ⬆ | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: site-development | |
| path: site.zip | |
| - name: Remove large WebR assets 🧹 | |
| run: | | |
| packages_path <- sprintf("./book/_site/site_libs/quarto-contrib/shinylive-%s/shinylive/webr/packages", shinylive::assets_version()) | |
| # remove the dirs with size > 100 MB | |
| for (x in list.dirs(packages_path)) { | |
| x_files <- file.info(list.files(x, full.names = TRUE)) | |
| if (any(x_files$size > 100 * 1024^2)) { | |
| print(x) | |
| print(x_files) | |
| unlink(x, recursive = TRUE) | |
| } | |
| } | |
| # refresh the `metadata.rds` file | |
| metadata_path <- file.path(packages_path, "metadata.rds") | |
| metadata <- readRDS(metadata_path) | |
| new_metadata <- metadata[intersect(names(metadata), list.dirs(packages_path, full.names = FALSE))] | |
| saveRDS(new_metadata, metadata_path) | |
| shell: Rscript {0} | |
| - name: Publish docs 📔 | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./book/_site | |
| destination_dir: development | |
| - name: GChat notification 🔔 | |
| if: (failure() || cancelled()) && env.gchat_webhook != '' | |
| uses: insightsengineering/google-chat-notification@master | |
| with: | |
| name: ${{ github.event.repository.name }} - development | |
| url: ${{ secrets.GCHAT_WEBHOOK }} | |
| status: ${{ job.status }} | |
| publish-stable: | |
| name: Build & Deploy TLGC (stable) 📖 | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/insightsengineering/rstudio:latest | |
| permissions: | |
| contents: write | |
| needs: | |
| - cache-refresh | |
| if: ${{ always() }} | |
| steps: | |
| - name: Checkout repo 🛎 | |
| uses: actions/[email protected] | |
| - name: Cache artifacts 📀 | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| book/_freeze | |
| key: ${{ runner.os }}-tlg-catalog-stable | |
| - name: Normalize variables 📏 | |
| run: | | |
| echo "gchat_webhook=${{ secrets.GCHAT_WEBHOOK }}" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Setup R dependencies 🎦 | |
| uses: insightsengineering/setup-r-dependencies@v1 | |
| env: | |
| GITHUB_PAT: ${{ steps.github-token.outputs.token }} | |
| with: | |
| repository-path: "./package" | |
| skip-desc-branch: true | |
| skip-desc-dev: true | |
| repository-list: "r-universe-stable=https://insightsengineering.r-universe.dev/, PPM=PPM@latest" | |
| cache-version: "stable" | |
| - name: Render catalog 🖨 | |
| run: | | |
| quarto render --profile stable | |
| shell: bash | |
| working-directory: book | |
| - name: Create artifact 📂 | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| run: | | |
| zip -r9 ../../site.zip * | |
| shell: bash | |
| working-directory: book/_site | |
| - name: Remove large WebR assets 🧹 | |
| run: | | |
| packages_path <- sprintf("./book/_site/site_libs/quarto-contrib/shinylive-%s/shinylive/webr/packages", shinylive::assets_version()) | |
| # remove the dirs with size > 100 MB | |
| for (x in list.dirs(packages_path)) { | |
| x_files <- file.info(list.files(x, full.names = TRUE)) | |
| if (any(x_files$size > 100 * 1024^2)) { | |
| print(x) | |
| print(x_files) | |
| unlink(x, recursive = TRUE) | |
| } | |
| } | |
| # refresh the `metadata.rds` file | |
| metadata_path <- file.path(packages_path, "metadata.rds") | |
| metadata <- readRDS(metadata_path) | |
| new_metadata <- metadata[intersect(names(metadata), list.dirs(packages_path, full.names = FALSE))] | |
| saveRDS(new_metadata, metadata_path) | |
| shell: Rscript {0} | |
| - name: Upload docs ⬆ | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: site-stable | |
| path: site.zip | |
| - name: Publish docs 📔 | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./book/_site | |
| destination_dir: stable | |
| - name: GChat notification 🔔 | |
| if: (failure() || cancelled()) && env.gchat_webhook != '' | |
| uses: insightsengineering/google-chat-notification@master | |
| with: | |
| name: ${{ github.event.repository.name }} - stable | |
| url: ${{ secrets.GCHAT_WEBHOOK }} | |
| status: ${{ job.status }} | |
| upload-release-assets: | |
| name: Upload assets 🔼 | |
| needs: [publish-dev, publish-stable] | |
| runs-on: ubuntu-latest | |
| if: > | |
| startsWith(github.ref, 'refs/tags/v') | |
| && !contains(github.event.commits[0].message, '[skip docs]') | |
| steps: | |
| - name: Checkout repo 🛎 | |
| uses: actions/[email protected] | |
| - name: Download artifact ⏬ | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: site-development | |
| path: site-development | |
| - name: Download artifact ⏬ | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: site-stable | |
| path: site-stable | |
| - name: Upload binaries to release ⤴ | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: site-development/site.zip | |
| asset_name: catalog-development.zip | |
| tag: ${{ github.ref }} | |
| overwrite: true | |
| - name: Upload binaries to release ⤴ | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: site-stable/site.zip | |
| asset_name: catalog-stable.zip | |
| tag: ${{ github.ref }} | |
| overwrite: true |