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add channel_maps as metadata parameter to Bioformatsreader #201

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add channel_maps as metadata parameter to Bioformatsreader #201

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13 changes: 12 additions & 1 deletion ashlar/reg.py
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Original file line number Diff line number Diff line change
Expand Up @@ -252,6 +252,17 @@ def _num_images(self):
@property
def num_channels(self):
return self._metadata.getChannelCount(0)

@property
def channel_map(self):
n_channels = self._metadata.getChannelCount(0)
channel_names = []

for id in range(n_channels):
channel_names.append(self._metadata.getChannelName(0, id))
channel_map = dict(zip(list(range(n_channels)), channel_names))

return channel_map

@property
def num_plates(self):
Expand Down Expand Up @@ -391,7 +402,7 @@ def tile_size(self, i):
v = method(i).value
values.append(v)
return np.array(values, dtype=int)


class BioformatsReader(PlateReader):

Expand Down