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20 Open 275 Closed
20 Open 275 Closed
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Issues list

The --paths option can re-run the pipeline when initial asm or input file timestamps are updated
#308 opened Dec 11, 2024 by skoren
3
Verkko assemblies contiguity with respect to Hifiasm
#301 opened Nov 14, 2024 by SimonaSecomandi
6
2 chromosomal fusions from verkko 2.2 assembly not supported by the data
#294 opened Oct 16, 2024 by tbenavi1
11
Questions related to interpretation results phased assembly.
#245 opened Apr 5, 2024 by rfinkers
@Dmitry-Antipov
51
Better error reporting
#228 opened Feb 1, 2024 by Dmitry-Antipov
@brianwalenz
2
Snakemake 8 compatibility enhancement New feature or request
#224 opened Jan 13, 2024 by tbenavi1 v2.3
2
Strange GFA outputs in uncompressed gfa
#199 opened Sep 28, 2023 by skoren v2.3
Homogenize trio vs hic architecture enhancement New feature or request
#197 opened Sep 28, 2023 by skoren v2.3
1
Hi-C plus Trio on same run enhancement New feature or request
#193 opened Sep 15, 2023 by Dmitry-Antipov v2.3
@Dmitry-Antipov
2
Likely incorrect ONT-based resolution
#190 opened Sep 12, 2023 by skoren
@maickrau
Potential graphaligner/resolution instability bug Something isn't working
#176 opened Jul 24, 2023 by skoren
@maickrau
3
Improve coverage estimations for repeats
#172 opened Jul 13, 2023 by Dmitry-Antipov
Producing dual assemblies when no trio or Hi-C data is available enhancement New feature or request
#157 opened Jun 16, 2023 by smkumaill
@Dmitry-Antipov
7
Snakemake memory allocation bug Something isn't working
#125 opened Feb 13, 2023 by steven-solar
@brianwalenz
1
Incorporate mer counting for haplotypes in verkko enhancement New feature or request
#120 opened Jan 9, 2023 by skoren v2.3
@brianwalenz
Miscellaneous snakemake cleanup
#115 opened Nov 25, 2022 by skoren
@brianwalenz
1
Use only patch subsequence of ONT read in consensus enhancement New feature or request
#68 opened May 3, 2022 by skoren
1
Consider multiplicities of original nodes in the final layout question Further information is requested
#13 opened Nov 13, 2021 by snurk
@snurk
Identify homopolymers-count variants question Further information is requested
#7 opened Nov 5, 2021 by skoren
2
Consider alternate resolution in complex tangles enhancement New feature or request
#5 opened Nov 5, 2021 by skoren
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