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  1. pyfaidx pyfaidx Public

    Efficient pythonic random access to fasta subsequences

    Python 462 75

  2. Novartis/pisces Novartis/pisces Public

    PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

    Python 29 3

  3. fastqp fastqp Public

    Simple FASTQ quality assessment using Python

    Python 109 14

  4. simplesam simplesam Public

    Simple pure Python SAM parser and objects for working with SAM records

    Python 62 8

  5. hamstring hamstring Public

    Tools for generating and decoding error-correcting DNA barcodes

    Python 16 4