- Boston, MA
- http://mattshirley.com
- @mdshw5
Highlights
- Pro
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pyfaidx Public
Efficient pythonic random access to fasta subsequences
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venusos_starlink Public
Code for adding control over Starlink POE to VenusOS using ESP32 relay board and Node-RED
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batmon-ha Public
Forked from fl4p/batmon-haAdd-on for Home Assistant to connect JK, JBD and Daly BMS via Bluetooth
Python UpdatedSep 28, 2023 -
node-red-contrib-victron Public
Forked from victronenergy/node-red-contrib-victronHTML MIT License UpdatedJun 22, 2023 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJan 31, 2023 -
klipper Public
Forked from Klipper3d/klipperKlipper is a 3d-printer firmware
C GNU General Public License v3.0 UpdatedSep 18, 2022 -
simplesam Public
Simple pure Python SAM parser and objects for working with SAM records
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hamstring Public
Tools for generating and decoding error-correcting DNA barcodes
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fastqp Public
Simple FASTQ quality assessment using Python
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transcoorder Public
Convert SAM/BAM files with transcript coordinates to SAM files with genomic coordinates
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Novartis.github.io Public
Forked from Novartis/Novartis.github.ioPublic gallery of NIBR Open Source projects
HTML UpdatedNov 19, 2020 -
flask-bootstrapped-template Public
Forked from sohitmiglani/flask-bootstrapped-templateA template for building visualisation and analysis apps of RNA-seq data in Flask
Python MIT License UpdatedMar 14, 2020 -
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salmon Public
Forked from COMBINE-lab/salmonπ π£ π± Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
C++ GNU General Public License v3.0 UpdatedDec 19, 2019 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedAug 5, 2019 -
homebridge-camera-ffmpeg-ufv Public
Forked from shnhrrsn/homebridge-camera-ffmpeg-ufvUniFi Video plugin for Homebridge
JavaScript Other UpdatedJul 22, 2019 -
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kma Public
Forked from pachterlab/kmaKeep Me Around: Intron Retention Detection
Python GNU General Public License v2.0 UpdatedDec 24, 2018 -
leafcutter Public
Forked from davidaknowles/leafcutterAnnotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
R Apache License 2.0 UpdatedDec 12, 2018 -
squiggle Public
Forked from IQTLabs/squiggleπ DNA Sequence Visualization for Humans
Python MIT License UpdatedJul 30, 2018 -
AlignmentProcessor Public
Forked from WilsonSayresLab/AlignmentProcessorPrepares CDS fasta Alignments for use with several programs
Python GNU General Public License v3.0 UpdatedJul 30, 2018 -
freqgen Public
Forked from IQTLabs/freqgenGenerate DNA sequences with specified amino acid, codon, and k-mer frequencies
Python UpdatedJun 13, 2018 -
FreePSI Public
Forked from JY-Zhou/FreePSIAn alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome
C++ GNU General Public License v3.0 UpdatedMay 8, 2018 -
Awesome-Bioinformatics Public
Forked from danielecook/Awesome-BioinformaticsA curated list of awesome Bioinformatics libraries and software.
2 UpdatedMar 27, 2018 -
cnvkit Public
Forked from etal/cnvkitCopy number variant detection from targeted DNA sequencing
Python Other UpdatedFeb 26, 2018