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add support for groups other than rank in plotAbundance #250

add support for groups other than rank in plotAbundance

add support for groups other than rank in plotAbundance #250

Triggered via pull request October 1, 2024 12:19
@TuomasBormanTuomasBorman
synchronize #148
group
Status Failure
Total duration 19m 47s
Artifacts 3

rworkflows.yml

on: pull_request
Matrix: rworkflows
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15 errors and 9 warnings
windows-latest (4.4.1)
'top' must be <= nrow(x)
windows-latest (4.4.1)
'top' must be <= nrow(x)
windows-latest (4.4.1)
R CMD check found ERRORs
windows-latest (4.4.1)
Process completed with exit code 1.
macOS-latest (4.4.1)
'top' must be <= nrow(x)
macOS-latest (4.4.1)
'top' must be <= nrow(x)
macOS-latest (4.4.1)
R CMD check found ERRORs
macOS-latest (4.4.1)
Process completed with exit code 1.
ubuntu-latest (auto)
Process completed with exit code 1.
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
windows-latest (4.4.1)
dependencies 'BiocVersion', 'BiocStyle' are not available
windows-latest (4.4.1)
The following actions use a deprecated Node.js version and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
macOS-latest (4.4.1)
harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz
macOS-latest (4.4.1)
fribidi 1.0.15 is already installed and up-to-date. To reinstall 1.0.15, run: brew reinstall fribidi
macOS-latest (4.4.1)
macOS's Gatekeeper has been disabled for this Cask
macOS-latest (4.4.1)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
macOS-latest (4.4.1)
The following actions use a deprecated Node.js version and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ubuntu-latest (auto)
The following actions use a deprecated Node.js version and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-devel-r-auto-results", "macOS-biocversion-devel-r-4.4.1-results", "Windows-biocversion-devel-r-4.4.1-results". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/

Artifacts

Produced during runtime
Name Size
Linux-biocversion-devel-r-auto-results
11.2 MB
Windows-biocversion-devel-r-4.4.1-results
11.1 MB
macOS-biocversion-devel-r-4.4.1-results
11.6 MB