modified: requirements.txt #88

	name: build_and_test

	on:
	push:
	branches:
	- master
	workflow_dispatch:

	jobs:
	build_and_test:
	runs-on: ubuntu-20.04
	timeout-minutes: 60
	steps:
	- uses: actions/checkout@v2
	- name: Setup conda, install packages, and test celloracle
	run: \|
	sudo apt-get update
	sudo apt-get install -y bedtools
	wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
	bash miniconda.sh -b -p $HOME/miniconda
	source "$HOME/miniconda/etc/profile.d/conda.sh"
	hash -r
	conda config --set always_yes yes --set changeps1 no
	#conda update -q conda
	# Useful for debugging any issues with conda
	conda info -a
	# Create env
	conda create -q -n test-environment python=3.10
	# command to install dependencies
	conda activate test-environment
	conda install cython numpy pytest

	# Check pip
	echo pip_path
	which pip
	#Install fa2 for tutorial
	#pip install fa2
	# Install CellOracle
	pip install .
	# Show installed package
	conda list
	# command to run tests
	pytest -v

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