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Issues list

29.0.0 release
#1765 by joverlee521 was closed Feb 26, 2025
5 tasks done
@joverlee521
Automated CI failed due to check-docs
#1761 by joverlee521 was closed Feb 25, 2025
1
1
augur curate --help raises ValueError bug Something isn't working
#1753 by joverlee521 was closed Feb 12, 2025
1
7
Remove temporarily ignored link
#1752 by joverlee521 was closed Feb 26, 2025
1
@joverlee521
28.0.1 release
#1748 by joverlee521 was closed Feb 10, 2025
5 tasks done
@joverlee521
Remove augur.utils.read_strains
#1747 by joverlee521 was closed Feb 25, 2025
1
@joverlee521
1
28.0.0 release
#1742 by victorlin was closed Jan 30, 2025
5 tasks done
@victorlin
apply-geolocation-rules: Rule matching should be case-insensitive enhancement New feature or request
#1738 by joverlee521 was closed Jan 29, 2025
1
@joverlee521
1
CI: intermittent linkcheck failure for https://www.gnu.org/software/bash/manual/bash.html#ANSI_002dC-Quoting
#1735 by victorlin was closed Jan 22, 2025
1
@victorlin
27.2.0 release
#1733 by victorlin was closed Jan 22, 2025
5 tasks done
@victorlin
CI failing with new BioPython deprecation warning
#1727 by victorlin was closed Jan 30, 2025
2
5
27.1.0 release
#1724 by victorlin was closed Jan 15, 2025
5 tasks done
@victorlin
export: Add warning text to output JSON and schema enhancement New feature or request
#1722 by victorlin was closed Jan 22, 2025
1
export: Clarify behavior of --lat-longs documentation Improvements or additions to documentation
#1714 by victorlin was closed Jan 10, 2025
1
1
CI failing on mypy step bug Something isn't working
#1708 by victorlin was closed Jan 8, 2025
1
@victorlin
27.0.0 release
#1695 by victorlin was closed Dec 9, 2024
5 tasks done
@victorlin
merge: Quoting behavior
#1694 by victorlin was closed Dec 10, 2024
1
1
Inconsistency of lengths and mutations assigned to branches that are children of the root. bug Something isn't working
#1689 by rneher was closed Dec 26, 2024
1
3
26.2.0 release
#1684 by victorlin was closed Nov 20, 2024
5 tasks done
@victorlin
Remove Python 3.8 support breaking Makes a backwards incompatible change and should wait for major release enhancement New feature or request
#1680 by corneliusroemer was closed Dec 9, 2024
1
@victorlin
Bug in release workflow: it doesn't actually release anymore bug Something isn't working
#1674 by corneliusroemer was closed Nov 12, 2024
2
@victorlin
5
Improve help text of CLI options that use extend and ExtendOverwriteDefault actions documentation Improvements or additions to documentation
#1654 by joverlee521 was closed Jan 7, 2025
1
6
Update help docs for augur curate format-dates documentation Improvements or additions to documentation
#1651 by anna-parker was closed Nov 6, 2024
1
@joverlee521
7
curate apply-geolocation-rules: Allow rule overrides enhancement New feature or request
#1648 by joverlee521 was closed Feb 11, 2025
1
@joverlee521
2
Augur index may always report sequence file is missing even if output dir is missing? bug Something isn't working
#1644 by emmahodcroft was closed Sep 30, 2024
1
@victorlin
2
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